RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 TRIM43Q96BQ3 446 aaPredicted RBP17.28■□□□□ 0.36
SS18-216ENST00000580751 CEP89Q96ST8 783 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 CCDC39Q9UFE4 941 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 USP25Q9UHP3 1055 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 ZMYND8Q9ULU4 1186 aaPredicted RBP17.28■□□□□ 0.36
SS18-216ENST00000580751 DNM3Q9UQ16 869 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 HPSEQ9Y251 543 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 ARID2Q68CP9 1835 aa17.28■□□□□ 0.36
SS18-216ENST00000580751 ZBTB39O15060 712 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 GAS2O43903 313 aaKnown RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 MAFO75444 373 aaPredicted RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 TIMP1P01033 207 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 THPOP40225 353 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 POLGP54098 1239 aaPredicted RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 ECM1Q16610 540 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 TRIM71Q2Q1W2 868 aaKnown RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 TMEM119Q4V9L6 283 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 SPECC1Q5M775 1068 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 SHC4Q6S5L8 630 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 ELOA2Q8IYF1 753 aaPredicted RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 METTL13Q8N6R0 699 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 FSIP1Q8NA03 581 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 CCDC34Q96HJ3 373 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 EPSTI1Q96J88 318 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 TIGD1Q96MW7 591 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 PNMA5Q96PV4 448 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 MAP7D2Q96T17 732 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 SH2D3AQ9BRG2 576 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 PPP1R12CQ9BZL4 782 aa17.27■□□□□ 0.36
SS18-216ENST00000580751 FAM49AQ9H0Q0 323 aaPredicted RBP17.27■□□□□ 0.36
SS18-216ENST00000580751 ARHGEF35A5YM69 484 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 DGAT1O75907 488 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 LETM1O95202 739 aaPredicted RBP17.26■□□□□ 0.35
SS18-216ENST00000580751 EYA4O95677 639 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 CKBP12277 381 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 SELPP16109 830 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 SYN1P17600 705 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 DNM2P50570 870 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 GRB10Q13322 594 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 KARSQ15046 597 aaKnown RBP17.26■□□□□ 0.35
SS18-216ENST00000580751 EFCAB12Q6NXP0 572 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 ZNF710Q8N1W2 664 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 NME8Q8N427 588 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 ENGASEQ8NFI3 743 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 DNAJB3Q8WWF6 145 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 WNT8BQ93098 351 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 ZBTB10Q96DT7 871 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 BHMT2Q9H2M3 363 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 DHX33Q9H6R0 707 aaKnown RBP17.26■□□□□ 0.35
SS18-216ENST00000580751 SUGCTQ9HAC7 445 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 TANC1Q9C0D5 1861 aa17.26■□□□□ 0.35
SS18-216ENST00000580751 IGKV6-21A0A0C4DH24 114 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 M0QZ92 97 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 PARNO95453 639 aaKnown RBP17.25■□□□□ 0.35
SS18-216ENST00000580751 PLCG1P19174 1290 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 EMC2Q15006 297 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 IER5Q5VY09 327 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 MFSD5Q6N075 450 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 USP49Q70CQ1 688 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 LRRC8DQ7L1W4 858 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 FMR1NBQ8N0W7 255 aaPredicted RBP17.25■□□□□ 0.35
SS18-216ENST00000580751 LRRC71Q8N4P6 559 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 TMEM199Q8N511 208 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 LINC01465Q8N7H1 131 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 LBHD1Q9BQE6 289 aaPredicted RBP17.25■□□□□ 0.35
SS18-216ENST00000580751 ATP6V0A4Q9HBG4 840 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 KCNH3Q9ULD8 1083 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 LTBP2Q14767 1821 aa17.25■□□□□ 0.35
SS18-216ENST00000580751 UMODL1Q5DID0 1318 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 A0A087WWV3 80 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 E9PMD0 336 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 USO1O60763 962 aaKnown RBP17.24■□□□□ 0.35
SS18-216ENST00000580751 KINO60870 393 aaKnown RBP17.24■□□□□ 0.35
SS18-216ENST00000580751 PFKFB1P16118 471 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 CYP2C18P33260 490 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 SYKP43405 635 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 CLCN3P51790 818 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 MRPS6P82932 125 aaKnown RBP17.24■□□□□ 0.35
SS18-216ENST00000580751 SNW1Q13573 536 aaKnown RBP17.24■□□□□ 0.35
SS18-216ENST00000580751 ZNF618Q5T7W0 954 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 PADI6Q6TGC4 694 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 KCNK18Q7Z418 384 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 KIAA0319LQ8IZA0 1049 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 MCPH1Q8NEM0 835 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 TCP11Q8WWU5 503 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 PLIN2Q99541 437 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 MTRQ99707 1265 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 WNT8AQ9H1J5 351 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 STK17AQ9UEE5 414 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 AKT3Q9Y243 479 aa17.24■□□□□ 0.35
SS18-216ENST00000580751 RSPH10B2B2RC85 870 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 H0YGN5 161 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 CTSHP09668 335 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 RSPH10BP0C881 870 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 ITGB8P26012 769 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 RFC2P35250 354 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 CCL23P55773 120 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 CDC42EP1Q00587 391 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 FAM26DQ5JW98 314 aa17.23■□□□□ 0.35
SS18-216ENST00000580751 CCDC183Q5T5S1 534 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms