RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SNRPBP14678 240 aaKnown RBP6.96□□□□□ -1.3
VPS53-219ENST00000576019 IL2RBP14784 551 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 IREB2P48200 963 aaKnown RBP6.96□□□□□ -1.3
VPS53-219ENST00000576019 AMPD2Q01433 879 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 LLGL1Q15334 1064 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 GRIK5Q16478 980 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 NBPF9Q3BBW0 867 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 HP1BP3Q5SSJ5 553 aaPredicted RBP6.96□□□□□ -1.3
VPS53-219ENST00000576019 ZNF280DQ6N043 979 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 MMS22LQ6ZRQ5 1243 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 CDC37L1Q7L3B6 337 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 KREMEN2Q8NCW0 462 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 ACRBPQ8NEB7 543 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 TTC9Q92623 222 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 KREMEN1Q96MU8 473 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 C1QTNF1Q9BXJ1 281 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 RNF38Q9H0F5 515 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 OXSMQ9NWU1 459 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 PCDHGB6Q9Y5F9 930 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 RPGRIP1LQ68CZ1 1315 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 DYTNA2CJ06 578 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 FAM155AB1AL88 458 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 DDX3YO15523 660 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 PQBP1O60828 265 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 NEFMP07197 916 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 ZKSCAN1P17029 563 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 DNM2P50570 870 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 MECP2P51608 486 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 GPR85P60893 370 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 RNF4P78317 190 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 TMF1P82094 1093 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 SNW1Q13573 536 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 TUBB8Q3ZCM7 444 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 CREB3L3Q68CJ9 461 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 TMEM132EQ6IEE7 984 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 CLASRPQ8N2M8 674 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 CISD2Q8N5K1 135 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 RNF214Q8ND24 703 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 FAM156AQ8NDB6 213 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 SYTL5Q8TDW5 730 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 ZNF775Q96BV0 537 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 GUCD1Q96NT3 240 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 ACO2Q99798 780 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 CRB3Q9BUF7 120 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 CELF4Q9BZC1 486 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 MS4A5Q9H3V2 200 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 RSAD1Q9HA92 442 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 JPH1Q9HDC5 661 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 TOPORSQ9NS56 1045 aaPredicted RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 GFOD1Q9NXC2 390 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 ZNF652Q9Y2D9 606 aa6.95□□□□□ -1.3
VPS53-219ENST00000576019 DIS3Q9Y2L1 958 aaKnown RBP6.95□□□□□ -1.3
VPS53-219ENST00000576019 CDH23Q9H251 3354 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 ZDBF2Q9HCK1 2354 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 TRIM75PA6NK02 468 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 PRRT4C9JH25 899 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 STXBP3O00186 592 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 TGM5O43548 720 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 MSCO60682 206 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 GTF2A2P52657 109 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 KIF23Q02241 960 aaPredicted RBP6.94□□□□□ -1.3
VPS53-219ENST00000576019 TTLL4Q14679 1199 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 CCDC149Q6ZUS6 474 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 SYNE4Q8N205 404 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 NKAPQ8N5F7 415 aaKnown RBP6.94□□□□□ -1.3
VPS53-219ENST00000576019 PCDH19Q8TAB3 1148 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 FANCD2OSQ96PS1 177 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 SMOC1Q9H4F8 434 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 JADE2Q9NQC1 790 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 DISC1Q9NRI5 854 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 CCM2LQ9NUG4 571 aaPredicted RBP6.94□□□□□ -1.3
VPS53-219ENST00000576019 CRIM1Q9NZV1 1036 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 AP4E1Q9UPM8 1137 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 CFAP54Q96N23 3096 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 PALLDQ8WX93 1383 aa6.94□□□□□ -1.3
VPS53-219ENST00000576019 EPG5Q9HCE0 2579 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 GOLGA8AA7E2F4 631 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 GOLGA8BA8MQT2 603 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ADARB2-AS1A8MUL3 147 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 TIMM44O43615 452 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ADAM11O75078 769 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 CELF2O95319 508 aaKnown RBP6.93□□□□□ -1.3
VPS53-219ENST00000576019 AGR2O95994 175 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ZBED1O96006 694 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 THBDP07204 575 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 PTMSP20962 102 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ITGA6P23229 1130 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 SUZ12Q15022 739 aaKnown RBP6.93□□□□□ -1.3
VPS53-219ENST00000576019 ELF2Q15723 593 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 LRIT3Q3SXY7 679 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 LVRNQ6Q4G3 990 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 OVCH1Q7RTY7 1134 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 SRGAP1Q7Z6B7 1085 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 MYLK4Q86YV6 388 aaPredicted RBP6.93□□□□□ -1.3
VPS53-219ENST00000576019 GRAMD1CQ8IYS0 662 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 FAM43AQ8N2R8 423 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 PPP1R35Q8TAP8 253 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-219ENST00000576019 TGFBRAP1Q8WUH2 860 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 MPP4Q96JB8 637 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms