RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS53-217ENST00000575100 MAGED1Q9Y5V3 778 aaPredicted RBP7.81□□□□□ -1.16
VPS53-217ENST00000575100 SLC12A7Q9Y666 1083 aa7.81□□□□□ -1.16
VPS53-217ENST00000575100 TRAV20A0A0B4J274 112 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 M0R2C6 588 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 ECE2O60344 883 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 LILRA1O75019 489 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 GFPT2O94808 682 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 INMTO95050 263 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 ASLP04424 464 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 CHMLP26374 656 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 FLT3P36888 993 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 CAP2P40123 477 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 KCNJ4P48050 445 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 PPFIA1Q13136 1202 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 BRAPQ7Z569 592 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 CATIPQ7Z7H3 387 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 TAB3Q8N5C8 712 aaPredicted RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 C2orf69Q8N8R5 385 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 ZSCAN1Q8NBB4 408 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 DEPTORQ8TB45 409 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 IPO9Q96P70 1041 aaKnown RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 DBNDD1Q9H9R9 158 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 PAG1Q9NWQ8 432 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 JAG2Q9Y219 1238 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 PCDHB3Q9Y5E6 796 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 LAMB1P07942 1786 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 AREL1O15033 823 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 CPP00450 1065 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 EGFRP00533 1210 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 JMJD7P0C870 316 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 RAC2P15153 192 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 TDO2P48775 406 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 IDH3AP50213 366 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 ZYXQ15942 572 aaKnown RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 PRR16Q569H4 304 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 IER5Q5VY09 327 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 FASTKD5Q7L8L6 764 aaKnown RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 FGD2Q7Z6J4 655 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 GSTCDQ8NEC7 633 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 APPL2Q8NEU8 664 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 DCPSQ96C86 337 aaKnown RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 DDX11Q96FC9 970 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 FAM227BQ96M60 508 aa7.8□□□□□ -1.16
VPS53-217ENST00000575100 PIH1D3Q9NQM4 214 aaKnown RBP7.8□□□□□ -1.16
VPS53-217ENST00000575100 ADM5C9JUS6 153 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 RIMBP2O15034 1052 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ZBED1O96006 694 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 INPP5BP32019 993 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 GALNSP34059 522 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 HOXD12P35452 270 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 KIF23Q02241 960 aaPredicted RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 KIF4BQ2VIQ3 1234 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 IQSEC1Q6DN90 963 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 IQCEQ6IPM2 695 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 DLK2Q6UY11 383 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 CYP26C1Q6V0L0 522 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 SRGAP1Q7Z6B7 1085 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 SPNS2Q8IVW8 549 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 OR2W6PQ8NHA6 318 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 KLHL6Q8WZ60 621 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 PMEPA1Q969W9 287 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 TCF12Q99081 682 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 SEC62Q99442 399 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 UNC45AQ9H3U1 944 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ANKEF1Q9NU02 776 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 GGA1Q9UJY5 639 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 A0A0D9SFI3 127 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 C19orf81C9J6K1 198 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 OPA1O60313 960 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ARIH2O95376 493 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 HRGP04196 525 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 C6orf222P0C671 652 aaPredicted RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 RPS6KB1P23443 525 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 HIBADHP31937 336 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 SUMO1P63165 101 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 SLC6A19Q695T7 634 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 CWC27Q6UX04 472 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 CCDC129Q6ZRS4 1044 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 SLFN12Q8IYM2 578 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 KBTBD3Q8NAB2 608 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 RSRC1Q96IZ7 334 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 ZFRQ96KR1 1074 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 FSD1Q9BTV5 496 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 SMOC1Q9H4F8 434 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ZFYVE1Q9HBF4 777 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ATP6V0A4Q9HBG4 840 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 RNF186Q9NXI6 227 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 ABI2Q9NYB9 513 aaPredicted RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 PPARGC1AQ9UBK2 798 aaKnown RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 SALL4Q9UJQ4 1053 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 PCDHB10Q9UN67 800 aa7.79□□□□□ -1.16
VPS53-217ENST00000575100 POLR3KQ9Y2Y1 108 aaPredicted RBP7.79□□□□□ -1.16
VPS53-217ENST00000575100 PDE4DIPQ5VU43 2346 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 PITPNM2Q9BZ72 1349 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 SYNRGQ9UMZ2 1314 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 MYO5AQ9Y4I1 1855 aaKnown RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 ZNF157P51786 506 aaPredicted RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 FKBP1BP68106 108 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms