RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TBX21Q9UL17 535 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 LTBP2Q14767 1821 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 A0A1B0GVL5 298 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 GOLGA6L4A6NEF3 574 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 CAND2O75155 1236 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 CLTBP09497 229 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 PLA2G4BP0C869 781 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 CYP2C9P11712 490 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 CYP11B2P19099 503 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 PADI6Q6TGC4 694 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 FSIP1Q8NA03 581 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 IQUBQ8NA54 791 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 RETREG2Q8NC44 543 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 SLC7A3Q8WY07 619 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 DHX38Q92620 1227 aaKnown RBP20.24■□□□□ 0.83
CCDC40-213ENST00000574933 CCDC43Q96MW1 224 aaKnown RBP20.24■□□□□ 0.83
CCDC40-213ENST00000574933 XPNPEP1Q9NQW7 623 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 KCND2Q9NZV8 630 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 USP25Q9UHP3 1055 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 TET1Q8NFU7 2136 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 SCN5AQ14524 2016 aa20.24■□□□□ 0.83
CCDC40-213ENST00000574933 POLR2DO15514 142 aaKnown RBP20.23■□□□□ 0.83
CCDC40-213ENST00000574933 STAT6P42226 847 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 POLGP54098 1239 aaPredicted RBP20.23■□□□□ 0.83
CCDC40-213ENST00000574933 MKRN4PQ13434 485 aaPredicted RBP20.23■□□□□ 0.83
CCDC40-213ENST00000574933 EMC2Q15006 297 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 RINT1Q6NUQ1 792 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 EFCAB12Q6NXP0 572 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 RUFY4Q6ZNE9 571 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 C1orf186Q6ZWK4 172 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 KIAA0319LQ8IZA0 1049 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 NME8Q8N427 588 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 PDILTQ8N807 584 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 MCPH1Q8NEM0 835 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 CAGE1Q8TC20 777 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 PANK2Q9BZ23 570 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 GOLPH3LQ9H4A5 285 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 MAGEF1Q9HAY2 307 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 ATP6V0A4Q9HBG4 840 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 NOD1Q9Y239 953 aa20.23■□□□□ 0.83
CCDC40-213ENST00000574933 PITPNM1O00562 1244 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 KIAA0355O15063 1070 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 TMOD1P28289 359 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 NDUFA8P51970 172 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 UBE2HP62256 183 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 MCM6Q14566 821 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 ZNF710Q8N1W2 664 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 ENGASEQ8NFI3 743 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 WNT8BQ93098 351 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 ZBTB10Q96DT7 871 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 MTRQ99707 1265 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 NOC4LQ9BVI4 516 aaKnown RBP20.22■□□□□ 0.83
CCDC40-213ENST00000574933 TIPINQ9BVW5 301 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 KBTBD4Q9NVX7 518 aa20.22■□□□□ 0.83
CCDC40-213ENST00000574933 GADD45BO75293 160 aaPredicted RBP20.21■□□□□ 0.83
CCDC40-213ENST00000574933 GUCY2CP25092 1073 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 SYKP43405 635 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 IER5Q5VY09 327 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 CCDC155Q8N6L0 562 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 TCP11Q8WWU5 503 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 DHX58Q96C10 678 aa20.21■□□□□ 0.83
CCDC40-213ENST00000574933 ACTN4O43707 911 aaKnown RBP20.2■□□□□ 0.82
CCDC40-213ENST00000574933 USO1O60763 962 aaKnown RBP20.2■□□□□ 0.82
CCDC40-213ENST00000574933 PRPF40AO75400 957 aaKnown RBP20.2■□□□□ 0.82
CCDC40-213ENST00000574933 SLFN14P0C7P3 912 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 DNM2P50570 870 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 CLCN3P51790 818 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 BFSP2Q13515 415 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 SNW1Q13573 536 aaKnown RBP20.2■□□□□ 0.82
CCDC40-213ENST00000574933 ARSHQ5FYA8 562 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 FAM26DQ5JW98 314 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 SV2BQ7L1I2 683 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 RSPH3Q86UC2 560 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 FMR1NBQ8N0W7 255 aaPredicted RBP20.2■□□□□ 0.82
CCDC40-213ENST00000574933 LRRC71Q8N4P6 559 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 METTL13Q8N6R0 699 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 DNAJB3Q8WWF6 145 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 RUSC1Q9BVN2 902 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 TNMDQ9H2S6 317 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 SUGCTQ9HAC7 445 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 LMBRD1Q9NUN5 540 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 TMEM39AQ9NV64 488 aa20.2■□□□□ 0.82
CCDC40-213ENST00000574933 ASAP2O43150 1006 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 CKBP12277 381 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 ARL2P36404 184 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 CDC42EP1Q00587 391 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 FAM160A1Q05DH4 1040 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 DRP2Q13474 957 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 CNNM4Q6P4Q7 775 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 TRAF7Q6Q0C0 670 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 SH3RF1Q7Z6J0 888 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 GPBP1Q86WP2 473 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 MAP7D2Q96T17 732 aa20.19■□□□□ 0.82
CCDC40-213ENST00000574933 TRIM43BA6NCK2 446 aa20.18■□□□□ 0.82
CCDC40-213ENST00000574933 EVI5O60447 810 aa20.18■□□□□ 0.82
CCDC40-213ENST00000574933 ZNF202O95125 648 aa20.18■□□□□ 0.82
CCDC40-213ENST00000574933 SSBP05455 408 aaKnown RBP eCLIP20.18■□□□□ 0.82
CCDC40-213ENST00000574933 MGAT3Q09327 533 aa20.18■□□□□ 0.82
CCDC40-213ENST00000574933 MAPK7Q13164 816 aa20.18■□□□□ 0.82
CCDC40-213ENST00000574933 LONRF3Q496Y0 759 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms