RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 B4GALNT2Q8NHY0 566 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 GDAP1Q8TB36 358 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 TGFBRAP1Q8WUH2 860 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 GBP5Q96PP8 586 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 RAB3IPQ96QF0 476 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 MTRQ99707 1265 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 CELF4Q9BZC1 486 aaKnown RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 FAM129AQ9BZQ8 928 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 ZMYND12Q9H0C1 365 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 RAB17Q9H0T7 212 aa10.39□□□□□ -0.75
CCDC40-212ENST00000574799 CORO1CQ9ULV4 474 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-212ENST00000574799 SRRM3A6NNA2 597 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 DDAH1O94760 285 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 KRT18P05783 430 aaKnown RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 LDHBP07195 334 aaKnown RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 LACTB2Q53H82 288 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 SLC17A8Q8NDX2 589 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 DLGAP2Q9P1A6 1054 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 RASAL2Q9UJF2 1139 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 GSTA1P08263 222 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 ATP4AP20648 1035 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 CALML3P27482 149 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 MSH2P43246 934 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 LETM2Q2VYF4 491 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 SPTY2D1Q68D10 685 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 PDXDC2PQ6P474 469 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 TMEM154Q6P9G4 183 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 ZNF662Q6ZS27 426 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 WDR66Q8TBY9 1149 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 ARHGEF2Q92974 986 aaKnown RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 PDGFDQ9GZP0 370 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 TAOK3Q9H2K8 898 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 FAM114A2Q9NRY5 505 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 FGFR1OP2Q9NVK5 253 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 MCM9Q9NXL9 1143 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 SALL4Q9UJQ4 1053 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 A8MUI8 341 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 FLOT1O75955 427 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 STX2P32856 288 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 BTDP43251 543 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 RBM5P52756 815 aaKnown RBP eCLIP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 STK4Q13043 487 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 CUL3Q13618 768 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 SHROOM1Q2M3G4 852 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 C11orf91Q3C1V1 193 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 GRIPAP1Q4V328 841 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 TTI2Q6NXR4 508 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 C16orf86Q6ZW13 317 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 HEATR3Q7Z4Q2 680 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 PIK3R5Q8WYR1 880 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 TRIM51Q9BSJ1 452 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 CRNKL1Q9BZJ0 848 aaKnown RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 SLC12A6Q9UHW9 1150 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 NOC2LQ9Y3T9 749 aaKnown RBP10.38□□□□□ -0.75
CCDC40-212ENST00000574799 ATP6V0A2Q9Y487 856 aa10.38□□□□□ -0.75
CCDC40-212ENST00000574799 PLIN4Q96Q06 1357 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 IGKV6D-41A0A0C4DH26 115 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PPIP5K2O43314 1243 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 INF2Q27J81 1249 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 MAPKAPK5Q8IW41 473 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 GBP7Q8N8V2 638 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 GPKOWQ92917 476 aaPredicted RBP eCLIP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 ZNF570Q96NI8 536 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PURBQ96QR8 312 aaKnown RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 EBF2Q9HAK2 575 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 C10orf71Q711Q0 1435 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 A0A1W2PRG0 241 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 TCP11X1B4DZS4 312 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 EPHB6O15197 1021 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 SMNDC1O75940 238 aaKnown RBP eCLIP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 BYSLQ13895 437 aaKnown RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 LRRC41Q15345 812 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 SP8Q8IXZ3 490 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 KANSL2Q9H9L4 492 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 SCOCQ9UIL1 159 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 SNX24Q9Y343 169 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 DAGLAQ9Y4D2 1042 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 GSTTP1A0A1W2PQM5 241 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 AHCYL1O43865 530 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 LGR5O75473 907 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 BBOX1O75936 387 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PLCG1P19174 1290 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 ATP2B4P23634 1241 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PPP1R2P41236 205 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 TFAP4Q01664 338 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 KLC1Q07866 573 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PFKFB3Q16875 520 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 ZNF449Q6P9G9 518 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 RBM17Q96I25 401 aaKnown RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 PBKQ96KB5 322 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 ERGIC2Q96RQ1 377 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 CPVLQ9H3G5 476 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 DNAJC18Q9H819 358 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 BMP2KQ9NSY1 1161 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 TBC1D7Q9P0N9 293 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 SAP30BPQ9UHR5 308 aaKnown RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 DAAM1Q9Y4D1 1078 aa10.37□□□□□ -0.75
CCDC40-212ENST00000574799 USP15Q9Y4E8 981 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-212ENST00000574799 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms