RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 NEDD1Q8NHV4 660 aa2.53□□□□□ -2
CHD3-217ENST00000574022 UHMK1Q8TAS1 419 aaKnown RBP2.53□□□□□ -2
CHD3-217ENST00000574022 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.53□□□□□ -2
CHD3-217ENST00000574022 RIN2Q8WYP3 895 aaPredicted RBP2.53□□□□□ -2
CHD3-217ENST00000574022 UBE2FQ969M7 185 aa2.53□□□□□ -2
CHD3-217ENST00000574022 UTP4Q969X6 686 aaKnown RBP2.53□□□□□ -2
CHD3-217ENST00000574022 FERMT2Q96AC1 680 aa2.53□□□□□ -2
CHD3-217ENST00000574022 MAML3Q96JK9 1138 aa2.53□□□□□ -2
CHD3-217ENST00000574022 MYRFLQ96LU7 910 aa2.53□□□□□ -2
CHD3-217ENST00000574022 CGRRF1Q99675 332 aa2.53□□□□□ -2
CHD3-217ENST00000574022 EIF2AK1Q9BQI3 630 aaKnown RBP2.53□□□□□ -2
CHD3-217ENST00000574022 MTA3Q9BTC8 594 aa2.53□□□□□ -2
CHD3-217ENST00000574022 ISCA1Q9BUE6 129 aa2.53□□□□□ -2
CHD3-217ENST00000574022 CD244Q9BZW8 370 aa2.53□□□□□ -2
CHD3-217ENST00000574022 INO80BQ9C086 356 aaPredicted RBP2.53□□□□□ -2
CHD3-217ENST00000574022 WNT8AQ9H1J5 351 aa2.53□□□□□ -2
CHD3-217ENST00000574022 MYLK2Q9H1R3 596 aa2.53□□□□□ -2
CHD3-217ENST00000574022 SEMA4AQ9H3S1 761 aa2.53□□□□□ -2
CHD3-217ENST00000574022 POFUT1Q9H488 388 aa2.53□□□□□ -2
CHD3-217ENST00000574022 CERS4Q9HA82 394 aa2.53□□□□□ -2
CHD3-217ENST00000574022 RC3H2Q9HBD1 1191 aaKnown RBP2.53□□□□□ -2
CHD3-217ENST00000574022 IFT122Q9HBG6 1241 aa2.53□□□□□ -2
CHD3-217ENST00000574022 AGO4Q9HCK5 861 aaKnown RBP2.53□□□□□ -2
CHD3-217ENST00000574022 SLC6A20Q9NP91 592 aa2.53□□□□□ -2
CHD3-217ENST00000574022 KMT5AQ9NQR1 393 aa2.53□□□□□ -2
CHD3-217ENST00000574022 PDLIM7Q9NR12 457 aa2.53□□□□□ -2
CHD3-217ENST00000574022 SAGE1Q9NXZ1 904 aa2.53□□□□□ -2
CHD3-217ENST00000574022 MARCH2Q9P0N8 246 aa2.53□□□□□ -2
CHD3-217ENST00000574022 ZSWIM5Q9P217 1185 aa2.53□□□□□ -2
CHD3-217ENST00000574022 GULP1Q9UBP9 304 aa2.53□□□□□ -2
CHD3-217ENST00000574022 DPP7Q9UHL4 492 aa2.53□□□□□ -2
CHD3-217ENST00000574022 NRBP1Q9UHY1 535 aa2.53□□□□□ -2
CHD3-217ENST00000574022 CDC23Q9UJX2 597 aa2.53□□□□□ -2
CHD3-217ENST00000574022 TPCN1Q9ULQ1 816 aa2.53□□□□□ -2
CHD3-217ENST00000574022 LIMCH1Q9UPQ0 1083 aa2.53□□□□□ -2
CHD3-217ENST00000574022 STXBP5LQ9Y2K9 1186 aa2.53□□□□□ -2
CHD3-217ENST00000574022 SNX13Q9Y5W8 968 aa2.53□□□□□ -2
CHD3-217ENST00000574022 SLC4A7Q9Y6M7 1214 aa2.53□□□□□ -2
CHD3-217ENST00000574022 X6R8D5 127 aa2.53□□□□□ -2
CHD3-217ENST00000574022 A0A087WV62 115 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 TMEM82A0PJX8 343 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 DYTNA2CJ06 578 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 FAM90A27PA6NNH2 459 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 PIK3R2O00459 728 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ELL2O00472 640 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 TERTO14746 1132 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 KPNA5O15131 536 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 HTRA2O43464 458 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 BUB1BO60566 1050 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 MAFKO60675 156 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 PRPF6O94906 941 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 PTPN1P18031 435 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 RPL17P18621 184 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 EDNRBP24530 442 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 LTKP29376 864 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 IL6STP40189 918 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 TECP42680 631 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 IL12RB1P42701 662 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 CEBPAP49715 358 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 CASP5P51878 434 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 MAPK10P53779 464 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 CCT2P78371 535 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 PPFIA1Q13136 1202 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 KCTD2Q14681 263 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 POLD3Q15054 466 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 GRIK4Q16099 956 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 HSF5Q4G112 596 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 DACT2Q5SW24 774 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 HYIQ5T013 277 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 PPP4R3AQ6IN85 833 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 PGBD2Q6P3X8 592 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 MZT2AQ6P582 158 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 TLDC1Q6P9B6 456 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ZPBP2Q6X784 338 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 LINC00114Q6XXX2 140 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 Q6ZS46 218 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 BEND4Q6ZU67 534 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ARHGAP27Q6ZUM4 889 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 SYDE1Q6ZW31 735 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 KCTD1Q719H9 257 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 MAEAQ7L5Y9 396 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 MAATS1Q7Z4T9 603 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 WAPLQ7Z5K2 1190 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ANKRD18AQ8IVF6 992 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 RBM12BQ8IXT5 1001 aaKnown RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 Q8N1Y9 231 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 CCDC89Q8N998 374 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 MARCH10Q8NA82 808 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 KLHDC4Q8TBB5 520 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 PLEKHO2Q8TD55 490 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 SLC16A10Q8TF71 515 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 NRG4Q8WWG1 115 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 WFDC12Q8WWY7 111 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ERCC4Q92889 916 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 FATE1Q969F0 183 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 KIAA1191Q96A73 305 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 ARL8AQ96BM9 186 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 LENG1Q96BZ8 264 aaPredicted RBP2.52□□□□□ -2.01
CHD3-217ENST00000574022 TBC1D20Q96BZ9 403 aa2.52□□□□□ -2.01
CHD3-217ENST00000574022 GCC1Q96CN9 775 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms