RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 LXNQ9BS40 222 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 BACH2Q9BYV9 841 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 TTC12Q9H892 705 aaPredicted RBP22.59■■□□□ 1.21
NUP88-204ENST00000572290 RFXAPO00287 272 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 MCM7P33993 719 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 NLRP11P59045 1033 aaKnown RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 FAM43BQ6ZT52 329 aaPredicted RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 SPRED2Q7Z698 418 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 RTN4RL1Q86UN2 441 aaPredicted RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 C4orf19Q8IY42 314 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 SP7Q8TDD2 431 aaPredicted RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 DYDC2Q96IM9 177 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 TGS1Q96RS0 853 aaKnown RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 ERVK-5Q9HDB9 667 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 RGL1Q9NZL6 768 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 WRAP73Q9P2S5 460 aaPredicted RBP22.58■■□□□ 1.21
NUP88-204ENST00000572290 CDH23Q9H251 3354 aa22.58■■□□□ 1.21
NUP88-204ENST00000572290 IGKV6-21A0A0C4DH24 114 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 EPOPA6NHQ4 379 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 GPR182O15218 404 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 ERVK-21P61565 698 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 ORC2Q13416 577 aaPredicted RBP22.57■■□□□ 1.2
NUP88-204ENST00000572290 PLA2G4FQ68DD2 849 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 JPH2Q9BR39 696 aaPredicted RBP22.57■■□□□ 1.2
NUP88-204ENST00000572290 TSPYL2Q9H2G4 693 aaPredicted RBP22.57■■□□□ 1.2
NUP88-204ENST00000572290 TMEM60Q9H2L4 133 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 ADAMTS10Q9H324 1103 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 TMX1Q9H3N1 280 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 ZSWIM4Q9H7M6 989 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 CYP26B1Q9NR63 512 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 ST3GAL5Q9UNP4 418 aa22.57■■□□□ 1.2
NUP88-204ENST00000572290 MAFO75444 373 aaPredicted RBP22.56■■□□□ 1.2
NUP88-204ENST00000572290 TRAPPC10P48553 1259 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 DNM2P50570 870 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 GPC3P51654 580 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 NPEPPSP55786 919 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 CYP4A11Q02928 519 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 CTTNQ14247 550 aaKnown RBP22.56■■□□□ 1.2
NUP88-204ENST00000572290 ZNF174Q15697 407 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 FAM228AQ86W67 206 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 CEP170P1Q96L14 293 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 EIF2AK1Q9BQI3 630 aaKnown RBP22.56■■□□□ 1.2
NUP88-204ENST00000572290 MTUS1Q9ULD2 1270 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 NOL7Q9UMY1 257 aaKnown RBP22.56■■□□□ 1.2
NUP88-204ENST00000572290 PPME1Q9Y570 386 aa22.56■■□□□ 1.2
NUP88-204ENST00000572290 CHD9Q3L8U1 2897 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 SLITRK3O94933 977 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 U2AF2P26368 475 aaKnown RBP eCLIP22.55■■□□□ 1.2
NUP88-204ENST00000572290 GJB2P29033 226 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 YWHABP31946 246 aaKnown RBP22.55■■□□□ 1.2
NUP88-204ENST00000572290 DRP2Q13474 957 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 TTC38Q5R3I4 469 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 OTUD6AQ7L8S5 288 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 TPH2Q8IWU9 490 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 NEK9Q8TD19 979 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 ZNF668Q96K58 619 aaPredicted RBP22.55■■□□□ 1.2
NUP88-204ENST00000572290 SCLT1Q96NL6 688 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 GTF3C3Q9Y5Q9 886 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 KAT6AQ92794 2004 aa22.55■■□□□ 1.2
NUP88-204ENST00000572290 GTPBP6O43824 516 aaPredicted RBP22.54■■□□□ 1.2
NUP88-204ENST00000572290 EIF4BP23588 611 aaKnown RBP22.54■■□□□ 1.2
NUP88-204ENST00000572290 CDC42EP1Q00587 391 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 NPAS4Q8IUM7 802 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 NLRP7Q8WX94 980 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 SLC7A3Q8WY07 619 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 PPM1EQ8WY54 764 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 HSD17B14Q9BPX1 270 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 SUCLA2Q9P2R7 463 aaPredicted RBP22.54■■□□□ 1.2
NUP88-204ENST00000572290 COL6A3P12111 3177 aa22.54■■□□□ 1.2
NUP88-204ENST00000572290 DENND3A2RUS2 1198 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 MGEA5O60502 916 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 OR52Z1P0C646 297 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 STAG3L1P0CL83 205 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 GRB10Q13322 594 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 EXOC8Q8IYI6 725 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 ZNF579Q8NAF0 562 aaKnown RBP22.53■■□□□ 1.2
NUP88-204ENST00000572290 SAMD11Q96NU1 681 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 ADAM2Q99965 735 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 C17orf80Q9BSJ5 609 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 SMC3Q9UQE7 1217 aa22.53■■□□□ 1.2
NUP88-204ENST00000572290 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.53■■□□□ 1.2
NUP88-204ENST00000572290 GBF1Q92538 1859 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 POTEMA6NI47 508 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 DGKIO75912 1065 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 LYPLA2O95372 231 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 DARSP14868 501 aaKnown RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 POU3F3P20264 500 aaPredicted RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 RFC5P40937 340 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 POLGP54098 1239 aaPredicted RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 XKR9Q5GH70 373 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 FIBCD1Q8N539 461 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 ZNF689Q96CS4 500 aaPredicted RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 DHX33Q9H6R0 707 aaKnown RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 RC3H2Q9HBD1 1191 aaKnown RBP22.52■■□□□ 1.2
NUP88-204ENST00000572290 RGS18Q9NS28 235 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 C1orf112Q9NSG2 853 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 LRFN2Q9ULH4 789 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 MTCH2Q9Y6C9 303 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 PTPRSQ13332 1948 aa22.52■■□□□ 1.2
NUP88-204ENST00000572290 SIP14410 1827 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms