RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LRRC47Q8N1G4 583 aaKnown RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 DAGLBQ8NCG7 672 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 BVESQ8NE79 360 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 ZSWIM2Q8NEG5 633 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 PLBD2Q8NHP8 589 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 SYTL5Q8TDW5 730 aaPredicted RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 MASTLQ96GX5 879 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 RCC1LQ96I51 464 aaKnown RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 HRASLS5Q96KN8 279 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 UTP14AQ9BVJ6 771 aaKnown RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 APEX2Q9UBZ4 518 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 TAGLN3Q9UI15 199 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 ZMYM5Q9UJ78 669 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 RNF123Q5XPI4 1314 aa7.27□□□□□ -1.24
VPS53-212ENST00000572259 NRXN2Q9P2S2 1712 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 TCERG1O14776 1098 aaKnown RBP7.27□□□□□ -1.25
VPS53-212ENST00000572259 ANXA1P04083 346 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 PTMAP06454 111 aaKnown RBP7.27□□□□□ -1.25
VPS53-212ENST00000572259 KCNA3P22001 575 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 GPTP24298 496 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 CHRNA5P30532 468 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 TCIRG1Q13488 830 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 GFOD2Q3B7J2 385 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ALFQ53S48 1182 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 TMEM67Q5HYA8 995 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 FAM102BQ5T8I3 360 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 STYK1Q6J9G0 422 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 RNF180Q86T96 592 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 TSPYL5Q86VY4 417 aaPredicted RBP7.27□□□□□ -1.25
VPS53-212ENST00000572259 SMAP1Q8IYB5 467 aaPredicted RBP7.27□□□□□ -1.25
VPS53-212ENST00000572259 ZNF34Q8IZ26 560 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ZNF655Q8N720 491 aaPredicted RBP7.27□□□□□ -1.25
VPS53-212ENST00000572259 C8orf58Q8NAV2 365 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ATL2Q8NHH9 583 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ASB11Q8WXH4 323 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ZDHHC15Q96MV8 337 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 SPATA9Q9BWV2 254 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 HDAC8Q9BY41 377 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 AS3MTQ9HBK9 375 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 PTPRHQ9HD43 1115 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 VAV3Q9UKW4 847 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 RNF112Q9ULX5 631 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 MINPP1Q9UNW1 487 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 PXDNLA1KZ92 1463 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ARFGEF1Q9Y6D6 1849 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 ATP10DQ9P241 1426 aa7.27□□□□□ -1.25
VPS53-212ENST00000572259 BRCA1P38398 1863 aaKnown RBP7.26□□□□□ -1.25
VPS53-212ENST00000572259 IBTKQ9P2D0 1353 aaPredicted RBP7.26□□□□□ -1.25
VPS53-212ENST00000572259 A0A087X0B3 334 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 PDE8AO60658 829 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 TCEA3O75764 348 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 GSNP06396 782 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 SRFP11831 508 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 NPR1P16066 1061 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 CPEP16870 476 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 PRKCQQ04759 706 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 NEXNQ0ZGT2 675 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 MLC1Q15049 377 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 AOC3Q16853 763 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 PROSER3Q2NL68 480 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 ERAP2Q6P179 960 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 NECAB2Q7Z6G3 386 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 ARHGEF39Q8N4T4 335 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 RPGRQ92834 1020 aaKnown RBP7.26□□□□□ -1.25
VPS53-212ENST00000572259 MISP3Q96FF7 219 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 KRTAP9-9Q9BYP9 154 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 KRTAP9-4Q9BYQ2 154 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 CGGBP1Q9UFW8 167 aaPredicted RBP7.26□□□□□ -1.25
VPS53-212ENST00000572259 TRMT112Q9UI30 125 aaKnown RBP7.26□□□□□ -1.25
VPS53-212ENST00000572259 DUSP13Q9UII6 198 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 PPP2R3BQ9Y5P8 575 aa7.26□□□□□ -1.25
VPS53-212ENST00000572259 ZRANB2O95218 330 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS53-212ENST00000572259 KCNH1O95259 989 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 F2P00734 622 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 ITGAVP06756 1048 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 SRGNP10124 158 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 VDRP11473 427 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 NOP2P46087 812 aaKnown RBP7.25□□□□□ -1.25
VPS53-212ENST00000572259 POU4F1Q01851 419 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 EXOSC9Q06265 439 aaKnown RBP7.25□□□□□ -1.25
VPS53-212ENST00000572259 HSP90AA2PQ14568 343 aaPredicted RBP7.25□□□□□ -1.25
VPS53-212ENST00000572259 SUSD4Q5VX71 490 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 TMPRSS7Q7RTY8 843 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 CREG2Q8IUH2 290 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 AFAP1L2Q8N4X5 818 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 MAGEB6Q8N7X4 407 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 TSPYL6Q8N831 410 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 TCTN2Q96GX1 697 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 RBM17Q96I25 401 aaKnown RBP7.25□□□□□ -1.25
VPS53-212ENST00000572259 SEMA3GQ9NS98 782 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 MAPRE3Q9UPY8 281 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 EMC9Q9Y3B6 208 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 SH3TC1Q8TE82 1336 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 PITPNM2Q9BZ72 1349 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 FANCIQ9NVI1 1328 aa7.25□□□□□ -1.25
VPS53-212ENST00000572259 CCDC88AQ3V6T2 1871 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 A0A1W2PQU0 124 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 KLRG2A4D1S0 409 aaPredicted RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 WASH4PA8MWX3 477 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 H0Y8X5 98 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms