RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IRAK1P51617 712 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 TNNC1P63316 161 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 SLFN11Q7Z7L1 901 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 ACTRT1Q8TDG2 376 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 PARVGQ9HBI0 331 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 H0YIN7 160 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.86■■□□□ 1.57
VPS53-211ENST00000571805 TMX2Q9Y320 296 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 A0A0A6YYK5 440 aaPredicted RBP24.86■■□□□ 1.57
VPS53-211ENST00000571805 H2AFZP0C0S5 128 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 FERP16591 822 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 PRELPP51888 382 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 TRAF1Q13077 416 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 COG2Q14746 738 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 H2AFVQ71UI9 128 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 ZNF720Q7Z2F6 126 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 PIK3R5Q8WYR1 880 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 RSPH14Q9UHP6 348 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 HERC5Q9UII4 1024 aaKnown RBP24.86■■□□□ 1.57
VPS53-211ENST00000571805 INTUQ9ULD6 942 aa24.86■■□□□ 1.57
VPS53-211ENST00000571805 SHTN1A0MZ66 631 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 GCOM1H8Y6P7 765 aaPredicted RBP24.85■■□□□ 1.57
VPS53-211ENST00000571805 POLR2MP0CAP2 368 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 ZNF131P52739 623 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 VPS36Q86VN1 386 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 KSR1Q8IVT5 923 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 KLHL7Q8IXQ5 586 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 FLAD1Q8NFF5 587 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 SLC30A5Q8TAD4 765 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 CCDC43Q96MW1 224 aaKnown RBP24.85■■□□□ 1.57
VPS53-211ENST00000571805 RUFY1Q96T51 708 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 MKNK1Q9BUB5 465 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 WRAP73Q9P2S5 460 aaPredicted RBP24.85■■□□□ 1.57
VPS53-211ENST00000571805 STXBP5LQ9Y2K9 1186 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 FRMPD4Q14CM0 1322 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 STAT1P42224 750 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 ARHGEF10LQ9HCE6 1279 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 DMAC2Q9NW81 257 aa24.85■■□□□ 1.57
VPS53-211ENST00000571805 PLSCR1O15162 318 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 GFPT2O94808 682 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 UBXN2AP68543 259 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 CCDC174Q6PII3 467 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 METTL13Q8N6R0 699 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 LNX1Q8TBB1 728 aaPredicted RBP24.84■■□□□ 1.57
VPS53-211ENST00000571805 C7orf43Q8WVR3 580 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 CAPS2Q9BXY5 557 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 RANBP17Q9H2T7 1088 aaKnown RBP24.84■■□□□ 1.57
VPS53-211ENST00000571805 SEL1LQ9UBV2 794 aa24.84■■□□□ 1.57
VPS53-211ENST00000571805 CEP104O60308 925 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 MUTP22033 750 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 FMO5P49326 533 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 WHAMMQ8TF30 809 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 TSPYL1Q9H0U9 437 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 ZNF233A6NK53 670 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 YDJCA8MPS7 323 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 TRIM66O15016 1216 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 EVI5O60447 810 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 GAS7O60861 476 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 VIL1P09327 827 aaKnown RBP24.83■■□□□ 1.57
VPS53-211ENST00000571805 GUCY2FP51841 1108 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 NPEPPSP55786 919 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 CEP55Q53EZ4 464 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 CFAP58Q5T655 872 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 U2AF1L4Q8WU68 220 aaKnown RBP24.83■■□□□ 1.57
VPS53-211ENST00000571805 ZFP91Q96JP5 570 aaPredicted RBP24.83■■□□□ 1.57
VPS53-211ENST00000571805 NACC1Q96RE7 527 aa24.83■■□□□ 1.57
VPS53-211ENST00000571805 UBE4BO95155 1302 aa24.83■■□□□ 1.56
VPS53-211ENST00000571805 BHMG1C9JSJ3 638 aaPredicted RBP24.82■■□□□ 1.56
VPS53-211ENST00000571805 KRT14P02533 472 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 SOX5P35711 763 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 SKOR1P84550 965 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 PTPROQ16827 1216 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 LMBR1Q8WVP7 490 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 CALR3Q96L12 384 aaKnown RBP24.82■■□□□ 1.56
VPS53-211ENST00000571805 STK33Q9BYT3 514 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 UNC45AQ9H3U1 944 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 GRIN2DO15399 1336 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 F8VZ95 297 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 PPP1R12BO60237 982 aaPredicted RBP24.82■■□□□ 1.56
VPS53-211ENST00000571805 ERVK-9P63128 1117 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 B3GNT9Q6UX72 402 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 CD302Q8IX05 232 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 EIF1ADQ8N9N8 165 aaKnown RBP24.82■■□□□ 1.56
VPS53-211ENST00000571805 ISCUQ9H1K1 167 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 AGPAT3Q9NRZ7 376 aa24.82■■□□□ 1.56
VPS53-211ENST00000571805 SUCLA2Q9P2R7 463 aaPredicted RBP24.82■■□□□ 1.56
VPS53-211ENST00000571805 TCP10L2B9ZVM9 353 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 ARP10275 920 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 CHRNA5P30532 468 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 GALCP54803 685 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 PEX26Q7Z412 305 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP24.81■■□□□ 1.561e-7■■■■□ 26.6
VPS53-211ENST00000571805 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.81■■□□□ 1.569e-7■■□□□ 12.3
VPS53-211ENST00000571805 SYT11Q9BT88 431 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 GPR88Q9GZN0 384 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 TAF1DQ9H5J8 278 aaPredicted RBP24.81■■□□□ 1.56
VPS53-211ENST00000571805 GOPCQ9HD26 462 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 ECHS1P30084 290 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 CBWD6Q4V339 395 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 CBWD3Q5JTY5 395 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms