RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IPO9Q96P70 1041 aaKnown RBP23.03■■□□□ 1.28
VPS53-210ENST00000571456 NOD1Q9Y239 953 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 SRPRBQ9Y5M8 271 aaKnown RBP23.03■■□□□ 1.28
VPS53-210ENST00000571456 ZBBXA8MT70 800 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 CCL23P55773 120 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 CHMP4BP1P59074 171 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 KRT85P78386 507 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 PRKCEQ02156 737 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 RPUSD2Q8IZ73 545 aaKnown RBP23.02■■□□□ 1.28
VPS53-210ENST00000571456 CCDC155Q8N6L0 562 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 LINC00301Q8NCQ3 95 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 LXNQ9BS40 222 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 NIFKQ9BYG3 293 aaKnown RBP23.02■■□□□ 1.28
VPS53-210ENST00000571456 CD320Q9NPF0 282 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 KDM3AQ9Y4C1 1321 aa23.02■■□□□ 1.28
VPS53-210ENST00000571456 TRIP12Q14669 1992 aaPredicted RBP23.01■■□□□ 1.27
VPS53-210ENST00000571456 VWA3AA6NCI4 1184 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 SLITRK3O94933 977 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 CA3P07451 260 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 INSRRP14616 1297 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 MARK3P27448 753 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 GRIK4Q16099 956 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 PTGISQ16647 500 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 FOXD4L5Q5VV16 416 aaPredicted RBP23.01■■□□□ 1.27
VPS53-210ENST00000571456 TAF2Q6P1X5 1199 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 BANK1Q8NDB2 785 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 FOXD4L4Q8WXT5 416 aaPredicted RBP23.01■■□□□ 1.27
VPS53-210ENST00000571456 JPH2Q9BR39 696 aaPredicted RBP23.01■■□□□ 1.27
VPS53-210ENST00000571456 SCAND2PQ9GZW5 306 aaPredicted RBP23.01■■□□□ 1.27
VPS53-210ENST00000571456 CERS4Q9HA82 394 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 CHMP5Q9NZZ3 219 aa23.01■■□□□ 1.27
VPS53-210ENST00000571456 MBLAC1A4D2B0 266 aaPredicted RBP23■■□□□ 1.27
VPS53-210ENST00000571456 EPOPA6NHQ4 379 aa23■■□□□ 1.27
VPS53-210ENST00000571456 SPTLC2O15270 562 aa23■■□□□ 1.27
VPS53-210ENST00000571456 MAGEB2O15479 319 aa23■■□□□ 1.27
VPS53-210ENST00000571456 ZNF862O60290 1169 aa23■■□□□ 1.27
VPS53-210ENST00000571456 CAND2O75155 1236 aa23■■□□□ 1.27
VPS53-210ENST00000571456 ATP4AP20648 1035 aa23■■□□□ 1.27
VPS53-210ENST00000571456 ADAM17P78536 824 aa23■■□□□ 1.27
VPS53-210ENST00000571456 PTK7Q13308 1070 aa23■■□□□ 1.27
VPS53-210ENST00000571456 ZNF710Q8N1W2 664 aa23■■□□□ 1.27
VPS53-210ENST00000571456 KRI1Q8N9T8 703 aaKnown RBP23■■□□□ 1.27
VPS53-210ENST00000571456 CAGE1Q8TC20 777 aa23■■□□□ 1.27
VPS53-210ENST00000571456 LMBR1Q8WVP7 490 aa23■■□□□ 1.27
VPS53-210ENST00000571456 DYDC2Q96IM9 177 aa23■■□□□ 1.27
VPS53-210ENST00000571456 NACC1Q96RE7 527 aa23■■□□□ 1.27
VPS53-210ENST00000571456 NOC4LQ9BVI4 516 aaKnown RBP23■■□□□ 1.27
VPS53-210ENST00000571456 NT5C3AQ9H0P0 336 aa23■■□□□ 1.27
VPS53-210ENST00000571456 B4GALT4O60513 344 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 CEBPZQ03701 1054 aaKnown RBP22.99■■□□□ 1.27
VPS53-210ENST00000571456 BFSP2Q13515 415 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 UGCGQ16739 394 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 GDF6Q6KF10 455 aaPredicted RBP22.99■■□□□ 1.27
VPS53-210ENST00000571456 SERINC5Q86VE9 423 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 TPH2Q8IWU9 490 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 WNT8AQ9H1J5 351 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 ANKEF1Q9NU02 776 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 TUBE1Q9UJT0 475 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 TCHHQ07283 1943 aa22.99■■□□□ 1.27
VPS53-210ENST00000571456 PITPNM1O00562 1244 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 YWHABP31946 246 aaKnown RBP22.98■■□□□ 1.27
VPS53-210ENST00000571456 TXLNAP40222 546 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 UBA7P41226 1012 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 NHLH1Q02575 133 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 DNM1Q05193 864 aaKnown RBP22.98■■□□□ 1.27
VPS53-210ENST00000571456 RBL2Q08999 1139 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 IL17AQ16552 155 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 RPAINQ86UA6 219 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 CATSPER3Q86XQ3 398 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 ZNF579Q8NAF0 562 aaKnown RBP22.98■■□□□ 1.27
VPS53-210ENST00000571456 SNX29Q8TEQ0 813 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 SETD4Q9NVD3 440 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 RGL1Q9NZL6 768 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 FBXO2Q9UK22 296 aaPredicted RBP22.98■■□□□ 1.27
VPS53-210ENST00000571456 RCOR1Q9UKL0 485 aa22.98■■□□□ 1.27
VPS53-210ENST00000571456 PARNO95453 639 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 SPATA31C1P0DKV0 1188 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 CCT6AP40227 531 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 CYP4A11Q02928 519 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 CTTNQ14247 550 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 HYIQ5T013 277 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 RSPH3Q86UC2 560 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 RETREG2Q8NC44 543 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 FTOQ9C0B1 505 aaKnown RBP eCLIP22.97■■□□□ 1.27
VPS53-210ENST00000571456 TRPV6Q9H1D0 765 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 TRMT13Q9NUP7 481 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 TFIP11Q9UBB9 837 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 SEPT9Q9UHD8 586 aaPredicted RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 DBR1Q9UK59 544 aaKnown RBP22.97■■□□□ 1.27
VPS53-210ENST00000571456 PCDHA2Q9Y5H9 948 aa22.97■■□□□ 1.27
VPS53-210ENST00000571456 DDX11L8A8MPP1 907 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 GAS2O43903 313 aaKnown RBP22.96■■□□□ 1.27
VPS53-210ENST00000571456 STBD1O95210 358 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 RFC5P40937 340 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 TARBP2Q15633 366 aaKnown RBP22.96■■□□□ 1.27
VPS53-210ENST00000571456 NME8Q8N427 588 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 ARNTL2Q8WYA1 636 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 VWCEQ96DN2 955 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 CALML4Q96GE6 196 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 CDK5RAP3Q96JB5 506 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms