RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 XKR3Q5GH77 459 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 EFCAB12Q6NXP0 572 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 ANO5Q75V66 913 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 SPRED2Q7Z698 418 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 RTN4RL1Q86UN2 441 aaPredicted RBP16.89■□□□□ 0.29
VPS39-210ENST00000568357 MYOCDQ8IZQ8 938 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 MICALL1Q8N3F8 863 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 LRRC71Q8N4P6 559 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 TOP1MTQ969P6 601 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 PPP1R16BQ96T49 567 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 RAD9AQ99638 391 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 TMEM60Q9H2L4 133 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 CERS4Q9HA82 394 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 RGL1Q9NZL6 768 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 WRAP73Q9P2S5 460 aaPredicted RBP16.89■□□□□ 0.29
VPS39-210ENST00000568357 PADI3Q9ULW8 664 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 PCDHA12Q9UN75 941 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 GINS2Q9Y248 185 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 CHD7Q9P2D1 2997 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 NEMFO60524 1076 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 GPR32O75388 356 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 VTNP04004 478 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 P4HBP07237 508 aaKnown RBP16.88■□□□□ 0.29
VPS39-210ENST00000568357 MCM7P33993 719 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 TXKP42681 527 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 QARSP47897 775 aaKnown RBP16.88■□□□□ 0.29
VPS39-210ENST00000568357 MCM2P49736 904 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 KIZQ2M2Z5 673 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 TMEM266Q2M3C6 531 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 NCAPH2Q6IBW4 605 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 TMEM40Q8WWA1 233 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 SUGCTQ9HAC7 445 aa16.88■□□□□ 0.29
VPS39-210ENST00000568357 SEPT9Q9UHD8 586 aaPredicted RBP16.88■□□□□ 0.29
VPS39-210ENST00000568357 KAT6AQ92794 2004 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 SLITRK3O94933 977 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 UPP2O95045 317 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 TBC1D8BQ0IIM8 1120 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 ZNF174Q15697 407 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 MTERF2Q49AM1 385 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 NOSTRINQ8IVI9 506 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 ZNF579Q8NAF0 562 aaKnown RBP16.87■□□□□ 0.29
VPS39-210ENST00000568357 LINC01599Q8WXQ3 324 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 DYDC2Q96IM9 177 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 TMX1Q9H3N1 280 aa16.87■□□□□ 0.29
VPS39-210ENST00000568357 TTC12Q9H892 705 aaPredicted RBP16.87■□□□□ 0.29
VPS39-210ENST00000568357 NOC2LQ9Y3T9 749 aaKnown RBP16.87■□□□□ 0.29
VPS39-210ENST00000568357 EPOPA6NHQ4 379 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 RFXAPO00287 272 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 ZBTB39O15060 712 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 U2AF2P26368 475 aaKnown RBP eCLIP16.86■□□□□ 0.294e-9■■□□□ 12.9
VPS39-210ENST00000568357 CRYBB1P53674 252 aaPredicted RBP16.86■□□□□ 0.29
VPS39-210ENST00000568357 NPEPPSP55786 919 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 NLRP11P59045 1033 aaKnown RBP16.86■□□□□ 0.29
VPS39-210ENST00000568357 HTRA4P83105 476 aaPredicted RBP16.86■□□□□ 0.29
VPS39-210ENST00000568357 PAK2Q13177 524 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 DRP2Q13474 957 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 CTTNQ14247 550 aaKnown RBP16.86■□□□□ 0.29
VPS39-210ENST00000568357 PLA2G4FQ68DD2 849 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 ALYREFQ86V81 257 aaKnown RBP16.86■□□□□ 0.29
VPS39-210ENST00000568357 OSMRQ99650 979 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 HSD17B14Q9BPX1 270 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 ADAMTS10Q9H324 1103 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 C11orf16Q9NQ32 467 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 INSL6Q9Y581 213 aa16.86■□□□□ 0.29
VPS39-210ENST00000568357 IGKV6-21A0A0C4DH24 114 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 MAFO75444 373 aaPredicted RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 RPS6KA5O75582 802 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 TMOD1P28289 359 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 GJB2P29033 226 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 TOB1P50616 345 aaPredicted RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 CYP4A11Q02928 519 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 NFX1Q12986 1120 aaKnown RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 GNL2Q13823 731 aaKnown RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 TMEM31Q5JXX7 168 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 TPH2Q8IWU9 490 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 C4orf19Q8IY42 314 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 ZNF668Q96K58 619 aaPredicted RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 MAP7D2Q96T17 732 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 EIF2AK1Q9BQI3 630 aaKnown RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 LXNQ9BS40 222 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 TSPYL2Q9H2G4 693 aaPredicted RBP16.85■□□□□ 0.29
VPS39-210ENST00000568357 ERVK-5Q9HDB9 667 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 CYP26B1Q9NR63 512 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 ST3GAL5Q9UNP4 418 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 AKT3Q9Y243 479 aa16.85■□□□□ 0.29
VPS39-210ENST00000568357 LINC01553A4QN01 128 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 FAM86C2PA6NEL3 165 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 DKC1O60832 514 aaKnown RBP eCLIP16.84■□□□□ 0.29
VPS39-210ENST00000568357 NBR1Q14596 966 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 TTC38Q5R3I4 469 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 CRIPAKQ8N1N5 446 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 C4orf32Q8N8J7 132 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 ARNTL2Q8WYA1 636 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 KHSRPQ92945 711 aaKnown RBP eCLIP16.84■□□□□ 0.295e-6■□□□□ 8.2
VPS39-210ENST00000568357 FTHL17Q9BXU8 183 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 ZSWIM4Q9H7M6 989 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 PTPRSQ13332 1948 aa16.84■□□□□ 0.29
VPS39-210ENST00000568357 MGEA5O60502 916 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 SIP14410 1827 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 YWHABP31946 246 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms