RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF862O60290 1169 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 DNAJB1P25685 340 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 EFCAB12Q6NXP0 572 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 FAM228AQ86W67 206 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 KLHL23Q8NBE8 558 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 SLC5A5Q92911 643 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 LARP6Q9BRS8 491 aaKnown RBP18.17■□□□□ 0.5
CLN3-229ENST00000567963 C22orf23Q9BZE7 217 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 NRBP2Q9NSY0 501 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 RNF216Q9NWF9 866 aaPredicted RBP18.17■□□□□ 0.5
CLN3-229ENST00000567963 FNDC1Q4ZHG4 1894 aaPredicted RBP18.16■□□□□ 0.5
CLN3-229ENST00000567963 M0R2N6 131 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 CPLX1O14810 134 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 GAS7O60861 476 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 CSPG5O95196 566 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 DEXIO95424 95 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 IBSPP21815 317 aaPredicted RBP18.16■□□□□ 0.5
CLN3-229ENST00000567963 SFNP31947 248 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 CLCN3P51790 818 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 Q4G0T1 1027 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 LINC01465Q8N7H1 131 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 LRFN3Q9BTN0 628 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 UPF3BQ9BZI7 483 aaKnown RBP18.16■□□□□ 0.5
CLN3-229ENST00000567963 FAM50BQ9Y247 325 aa18.16■□□□□ 0.5
CLN3-229ENST00000567963 OATP04181 439 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 TMOD1P28289 359 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 GTF2F1P35269 517 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLN3-229ENST00000567963 NLRP11P59045 1033 aaKnown RBP18.15■□□□□ 0.5
CLN3-229ENST00000567963 FAM189BP81408 668 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 DLX2Q07687 328 aaPredicted RBP18.15■□□□□ 0.5
CLN3-229ENST00000567963 FAM102BQ5T8I3 360 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 LRCH2Q5VUJ6 765 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 GJA10Q969M2 543 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 TEKT3Q9BXF9 490 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 UNC45AQ9H3U1 944 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 IGFLR1Q9H665 355 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 AKT3Q9Y243 479 aa18.15■□□□□ 0.5
CLN3-229ENST00000567963 CYP3A7-CYP3A51PA0A087WV96 503 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 CHMP2AO43633 222 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 GPR37L1O60883 481 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 PSMD10O75832 226 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 CYP3A7P24462 503 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 SSTR3P32745 418 aaPredicted RBP18.14■□□□□ 0.5
CLN3-229ENST00000567963 JAK3P52333 1124 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 PRKCEQ02156 737 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 STK3Q13188 491 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 DSC3Q14574 896 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 NPY5RQ15761 445 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 UGCGQ16739 394 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 TMEM31Q5JXX7 168 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 BLIDQ8IZY5 108 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 ZNF710Q8N1W2 664 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 LRRC71Q8N4P6 559 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 POF1BQ8WVV4 589 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 MAP7D2Q96T17 732 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 ADAMTS10Q9H324 1103 aa18.14■□□□□ 0.5
CLN3-229ENST00000567963 TBKBP1A7MCY6 615 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 EIF4BP23588 611 aaKnown RBP18.14■□□□□ 0.49
CLN3-229ENST00000567963 IRS1P35568 1242 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 ADAM15Q13444 863 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 GALNT17Q6IS24 598 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 CPLX2Q6PUV4 134 aaKnown RBP18.14■□□□□ 0.49
CLN3-229ENST00000567963 FAM177A1Q8N128 213 aaPredicted RBP18.14■□□□□ 0.49
CLN3-229ENST00000567963 DAGLBQ8NCG7 672 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 AIFM3Q96NN9 605 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 ELAC1Q9H777 363 aaKnown RBP18.14■□□□□ 0.49
CLN3-229ENST00000567963 C11orf16Q9NQ32 467 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 PDRG1Q9NUG6 133 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 TMEM161AQ9NX61 479 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 PRKAG3Q9UGI9 489 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 PCDHB12Q9Y5F1 795 aa18.14■□□□□ 0.49
CLN3-229ENST00000567963 PLXNA4Q9HCM2 1894 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 LINC01565O15544 149 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 TDP2O95551 362 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 SPOUT1Q5T280 376 aaKnown RBP18.13■□□□□ 0.49
CLN3-229ENST00000567963 B3GNT9Q6UX72 402 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 ADGRD2Q7Z7M1 963 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 RDM1Q8NG50 284 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 PPP2R3CQ969Q6 453 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 ATP6V0A4Q9HBG4 840 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 AAASQ9NRG9 546 aa18.13■□□□□ 0.49
CLN3-229ENST00000567963 TYW1Q9NV66 732 aaKnown RBP18.13■□□□□ 0.49
CLN3-229ENST00000567963 TBX10O75333 385 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 ZP2Q05996 745 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 TBC1D8BQ0IIM8 1120 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 TARBP2Q15633 366 aaKnown RBP18.12■□□□□ 0.49
CLN3-229ENST00000567963 SMAD2Q15796 467 aaKnown RBP18.12■□□□□ 0.49
CLN3-229ENST00000567963 CLUL1Q15846 466 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 MOXD1Q6UVY6 613 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 MIER3Q7Z3K6 550 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 MBOAT7Q96N66 472 aa18.12■□□□□ 0.49
CLN3-229ENST00000567963 NIFKQ9BYG3 293 aaKnown RBP18.12■□□□□ 0.49
CLN3-229ENST00000567963 C19orf67A6NJJ6 358 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 MBTPS2O43462 519 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 FGFR1P11362 822 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 ZSCAN20P17040 1043 aaPredicted RBP18.11■□□□□ 0.49
CLN3-229ENST00000567963 GPC3P51654 580 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 UBE3AQ05086 875 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 NONOQ15233 471 aaKnown RBP eCLIP18.11■□□□□ 0.49
CLN3-229ENST00000567963 ADHFE1Q8IWW8 467 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms