RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.34■□□□□ 0.69
CLN3-217ENST00000565354 MAFBQ9Y5Q3 323 aaPredicted RBP19.34■□□□□ 0.69
CLN3-217ENST00000565354 IGSF9BQ9UPX0 1349 aa19.33■□□□□ 0.69
CLN3-217ENST00000565354 RRN3P2A6NIE6 340 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 EML1O00423 815 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 LAD1O00515 517 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 HBP1O60381 514 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 INSRRP14616 1297 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 ANP32AP39687 249 aaKnown RBP19.33■□□□□ 0.68
CLN3-217ENST00000565354 TECP42680 631 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 IKBKEQ14164 716 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 B3GNT9Q6UX72 402 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 BANK1Q8NDB2 785 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 ATP8B4Q8TF62 1192 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 BBXQ8WY36 941 aaPredicted RBP19.33■□□□□ 0.68
CLN3-217ENST00000565354 RAB34Q9BZG1 259 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 NRBP2Q9NSY0 501 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 CEP131Q9UPN4 1083 aa19.33■□□□□ 0.68
CLN3-217ENST00000565354 P4HBP07237 508 aaKnown RBP19.32■□□□□ 0.68
CLN3-217ENST00000565354 ALADP13716 330 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 SSTR3P32745 418 aaPredicted RBP19.32■□□□□ 0.68
CLN3-217ENST00000565354 PSMC5P62195 406 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 ZNF200P98182 395 aaPredicted RBP19.32■□□□□ 0.68
CLN3-217ENST00000565354 PRKCEQ02156 737 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 PTCRAQ6ISU1 281 aaPredicted RBP19.32■□□□□ 0.68
CLN3-217ENST00000565354 FAM117BQ6P1L5 589 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 ERMNQ8TAM6 284 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 LMBR1Q8WVP7 490 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 WDFY4Q6ZS81 3184 aa19.32■□□□□ 0.68
CLN3-217ENST00000565354 MYH9P35579 1960 aaKnown RBP19.32■□□□□ 0.68
CLN3-217ENST00000565354 POTEMA6NI47 508 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 TREHO43280 583 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 BMP15O95972 392 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 OATP04181 439 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 IL9P15248 144 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 QARSP47897 775 aaKnown RBP19.31■□□□□ 0.68
CLN3-217ENST00000565354 PTK7Q13308 1070 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 UGCGQ16739 394 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 DTHD1Q6ZMT9 781 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 FBXO22Q8NEZ5 403 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 NEK9Q8TD19 979 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 DYDC2Q96IM9 177 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 SEPT9Q9UHD8 586 aaPredicted RBP19.31■□□□□ 0.68
CLN3-217ENST00000565354 TUBE1Q9UJT0 475 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 MYO7AQ13402 2215 aa19.31■□□□□ 0.68
CLN3-217ENST00000565354 KAT6AQ92794 2004 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 GRXCR2A6NFK2 248 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 ZSCAN22P10073 491 aaPredicted RBP19.3■□□□□ 0.68
CLN3-217ENST00000565354 CYP4A11Q02928 519 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 SPIRE1Q08AE8 756 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 PUS10Q3MIT2 529 aaKnown RBP19.3■□□□□ 0.68
CLN3-217ENST00000565354 ZNF484Q5JVG2 852 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 C4orf32Q8N8J7 132 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 EIF2AK1Q9BQI3 630 aaKnown RBP19.3■□□□□ 0.68
CLN3-217ENST00000565354 C17orf80Q9BSJ5 609 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 INSL6Q9Y581 213 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 COL1A2P08123 1366 aa19.3■□□□□ 0.68
CLN3-217ENST00000565354 ZNF318Q5VUA4 2279 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 DDX11L8A8MPP1 907 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 ATP4AP20648 1035 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 HOXC8P31273 242 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 PRPHP41219 470 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 ATP2C1P98194 919 aaPredicted RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 CTTNQ14247 550 aaKnown RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 HIC1Q14526 733 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 MBTPS1Q14703 1052 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 SF3A1Q15459 793 aaKnown RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 CSPP1Q1MSJ5 1256 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 TRIM71Q2Q1W2 868 aaKnown RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 XKR3Q5GH77 459 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 ZNF618Q5T7W0 954 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 FAM173BQ6P4H8 233 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 TRAF7Q6Q0C0 670 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 TPH2Q8IWU9 490 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 TRAPPC12Q8WVT3 735 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 MRPL38Q96DV4 380 aaKnown RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 ZNF396Q96N95 335 aaPredicted RBP19.29■□□□□ 0.68
CLN3-217ENST00000565354 LXNQ9BS40 222 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 RGL1Q9NZL6 768 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 LRWD1Q9UFC0 647 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 TRIOO75962 3097 aa19.29■□□□□ 0.68
CLN3-217ENST00000565354 ZNF862O60290 1169 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 F13A1P00488 732 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 THPOP40225 353 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 MRE11P49959 708 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 FXR2P51116 673 aaKnown RBP eCLIP19.28■□□□□ 0.68
CLN3-217ENST00000565354 CEBPZQ03701 1054 aaKnown RBP19.28■□□□□ 0.68
CLN3-217ENST00000565354 MTERF2Q49AM1 385 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 HAUS3Q68CZ6 603 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 RSPH3Q86UC2 560 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 SERINC5Q86VE9 423 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 CCDC43Q96MW1 224 aaKnown RBP19.28■□□□□ 0.68
CLN3-217ENST00000565354 ZSWIM4Q9H7M6 989 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 STK24Q9Y6E0 443 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 NLRC5Q86WI3 1866 aa19.28■□□□□ 0.68
CLN3-217ENST00000565354 HTRA4P83105 476 aaPredicted RBP19.27■□□□□ 0.68
CLN3-217ENST00000565354 PTPROQ16827 1216 aa19.27■□□□□ 0.68
CLN3-217ENST00000565354 ARL6IP4Q66PJ3 421 aaKnown RBP19.27■□□□□ 0.68
CLN3-217ENST00000565354 TAF2Q6P1X5 1199 aa19.27■□□□□ 0.68
CLN3-217ENST00000565354 MTHFD1LQ6UB35 978 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms