RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 GPR32O75388 356 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 CENPBP07199 599 aaPredicted RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 IBSPP21815 317 aaPredicted RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 CLCN3P51790 818 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 LETM2Q2VYF4 491 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 TIGD5Q53EQ6 642 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 CMTR2Q8IYT2 770 aaKnown RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 BANK1Q8NDB2 785 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 WASF1Q92558 559 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 ADAM2Q99965 735 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 UBE2ZQ9H832 354 aaPredicted RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 RNF216Q9NWF9 866 aaPredicted RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 ORC3Q9UBD5 711 aaPredicted RBP25.32■■□□□ 1.64
CLN3-215ENST00000565236 PCDHB7Q9Y5E2 793 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 MUC3AQ02505 3323 aa25.32■■□□□ 1.64
CLN3-215ENST00000565236 BDP1A6H8Y1 2624 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 CTDNEP1O95476 244 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 LINC00271P0C7V0 271 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 SARSP49591 514 aaKnown RBP25.31■■□□□ 1.64
CLN3-215ENST00000565236 NLRP11P59045 1033 aaKnown RBP25.31■■□□□ 1.64
CLN3-215ENST00000565236 ZNF710Q8N1W2 664 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 LRRC71Q8N4P6 559 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 ETNPPLQ8TBG4 499 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 NECAB3Q96P71 396 aaPredicted RBP25.31■■□□□ 1.64
CLN3-215ENST00000565236 RGS18Q9NS28 235 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 GJB4Q9NTQ9 266 aa25.31■■□□□ 1.64
CLN3-215ENST00000565236 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.3■■□□□ 1.64
CLN3-215ENST00000565236 MGEA5O60502 916 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 TBC1D8BQ0IIM8 1120 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 PAN2Q504Q3 1202 aaKnown RBP25.3■■□□□ 1.64
CLN3-215ENST00000565236 B3GNT9Q6UX72 402 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 SLC24A5Q71RS6 500 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 NEK8Q86SG6 692 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 NECAB1Q8N987 351 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 PLVAPQ9BX97 442 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 C1orf112Q9NSG2 853 aa25.3■■□□□ 1.64
CLN3-215ENST00000565236 NEK4P51957 841 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 ME3Q16798 604 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 XKR3Q5GH77 459 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 FAM228AQ86W67 206 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 LINC01465Q8N7H1 131 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 OXER1Q8TDS5 423 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 LMAN2LQ9H0V9 348 aa25.29■■□□□ 1.64
CLN3-215ENST00000565236 NSUN3Q9H649 340 aaKnown RBP25.29■■□□□ 1.64
CLN3-215ENST00000565236 MRPL42Q9Y6G3 142 aaKnown RBP25.29■■□□□ 1.64
CLN3-215ENST00000565236 MYO7AQ13402 2215 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 GRM6O15303 877 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 SLC37A4O43826 429 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 GCFC2P16383 781 aaKnown RBP25.28■■□□□ 1.64
CLN3-215ENST00000565236 KCNA5P22460 613 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 TCEAL5Q5H9L2 206 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 PPP4R3AQ6IN85 833 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 PIK3AP1Q6ZUJ8 805 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 FAM20AQ96MK3 541 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 NAP1L4Q99733 375 aaKnown RBP25.28■■□□□ 1.64
CLN3-215ENST00000565236 NIFKQ9BYG3 293 aaKnown RBP25.28■■□□□ 1.64
CLN3-215ENST00000565236 ADAMTS10Q9H324 1103 aa25.28■■□□□ 1.64
CLN3-215ENST00000565236 SEPT9Q9UHD8 586 aaPredicted RBP25.28■■□□□ 1.64
CLN3-215ENST00000565236 C9IYK1 514 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 MARCH6O60337 910 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 CCNT1O60563 726 aaKnown RBP25.27■■□□□ 1.64
CLN3-215ENST00000565236 GATMP50440 423 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 TARBP2Q15633 366 aaKnown RBP25.27■■□□□ 1.64
CLN3-215ENST00000565236 MTERF2Q49AM1 385 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 GTF3C6Q969F1 213 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 SCLT1Q96NL6 688 aa25.27■■□□□ 1.64
CLN3-215ENST00000565236 DDX11L8A8MPP1 907 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 FDPSP14324 419 aaKnown RBP25.26■■□□□ 1.63
CLN3-215ENST00000565236 EIF4BP23588 611 aaKnown RBP25.26■■□□□ 1.63
CLN3-215ENST00000565236 NAALADL2Q58DX5 795 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 P2RX5Q93086 422 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 BRMS1Q9HCU9 246 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 ALG13Q9NP73 1137 aaKnown RBP25.26■■□□□ 1.63
CLN3-215ENST00000565236 KCNMB3Q9NPA1 279 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 PLAGL2Q9UPG8 496 aa25.26■■□□□ 1.63
CLN3-215ENST00000565236 ZSCAN20P17040 1043 aaPredicted RBP25.25■■□□□ 1.63
CLN3-215ENST00000565236 DNM2P50570 870 aa25.25■■□□□ 1.63
CLN3-215ENST00000565236 PSMC5P62195 406 aa25.25■■□□□ 1.63
CLN3-215ENST00000565236 LEXMQ3ZCV2 418 aa25.25■■□□□ 1.63
CLN3-215ENST00000565236 EP400NLQ6ZTU2 488 aa25.25■■□□□ 1.63
CLN3-215ENST00000565236 ZNF668Q96K58 619 aaPredicted RBP25.25■■□□□ 1.63
CLN3-215ENST00000565236 ATP6V0A4Q9HBG4 840 aa25.25■■□□□ 1.63
CLN3-215ENST00000565236 TMEM150BA6NC51 233 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 STBD1O95210 358 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 LARGE1O95461 756 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 SEC24BO95487 1268 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 KRT2P35908 639 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 GPC3P51654 580 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 FAM189BP81408 668 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 CDC42EP1Q00587 391 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 PPP2R5CQ13362 524 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 DSC3Q14574 896 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 FAM102BQ5T8I3 360 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 NLRP7Q8WX94 980 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 PABPC5Q96DU9 382 aaKnown RBP25.24■■□□□ 1.63
CLN3-215ENST00000565236 SH2D3AQ9BRG2 576 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 TMEM161AQ9NX61 479 aa25.24■■□□□ 1.63
CLN3-215ENST00000565236 TBKBP1A7MCY6 615 aa25.23■■□□□ 1.63
CLN3-215ENST00000565236 EML1O00423 815 aa25.23■■□□□ 1.63
CLN3-215ENST00000565236 TBX3O15119 743 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms