RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NRBP2Q9NSY0 501 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 ST3GAL5Q9UNP4 418 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 COG5Q9UP83 839 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.76■□□□□ 0.27
CLN3-213ENST00000565047 C9IYK1 514 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 JAK2O60674 1132 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 EIF5BO60841 1220 aaKnown RBP16.76■□□□□ 0.27
CLN3-213ENST00000565047 RPS6KA5O75582 802 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 FAM189BP81408 668 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 NR5A1Q13285 461 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 PIK3AP1Q6ZUJ8 805 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 MIER3Q7Z3K6 550 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 NPAS4Q8IUM7 802 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 FIBCD1Q8N539 461 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 MRPL38Q96DV4 380 aaKnown RBP16.76■□□□□ 0.27
CLN3-213ENST00000565047 FAM20AQ96MK3 541 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 OSMRQ99650 979 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 TCEAL9Q9UHQ7 104 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 RALGAPA2Q2PPJ7 1873 aa16.76■□□□□ 0.27
CLN3-213ENST00000565047 CCDC194A0A1B0GVG4 234 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 TMEM150BA6NC51 233 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 RB1P06400 928 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 GCFC2P16383 781 aaKnown RBP16.75■□□□□ 0.27
CLN3-213ENST00000565047 XBP1P17861 261 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 SPIRE1Q08AE8 756 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 DRP2Q13474 957 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 GPM6BQ13491 265 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 COL19A1Q14993 1142 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 XKR3Q5GH77 459 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 ANO5Q75V66 913 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 LRRC71Q8N4P6 559 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 METTL13Q8N6R0 699 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 WASF1Q92558 559 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 WRAP73Q9P2S5 460 aaPredicted RBP16.75■□□□□ 0.27
CLN3-213ENST00000565047 GINS2Q9Y248 185 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 NLRC5Q86WI3 1866 aa16.75■□□□□ 0.27
CLN3-213ENST00000565047 WNT7AO00755 349 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 TBX3O15119 743 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 GPR182O15218 404 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 SARSP49591 514 aaKnown RBP16.74■□□□□ 0.27
CLN3-213ENST00000565047 KCNQ1P51787 676 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 NLRP11P59045 1033 aaKnown RBP16.74■□□□□ 0.27
CLN3-213ENST00000565047 NFX1Q12986 1120 aaKnown RBP16.74■□□□□ 0.27
CLN3-213ENST00000565047 CAMK1Q14012 370 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 CMTR2Q8IYT2 770 aaKnown RBP16.74■□□□□ 0.27
CLN3-213ENST00000565047 HLA-CQ95604 372 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 PPP1R16BQ96T49 567 aa16.74■□□□□ 0.27
CLN3-213ENST00000565047 MRPL42Q9Y6G3 142 aaKnown RBP16.74■□□□□ 0.27
CLN3-213ENST00000565047 BTBD18B2RXH4 712 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 GRM6O15303 877 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 CCNT1O60563 726 aaKnown RBP16.73■□□□□ 0.27
CLN3-213ENST00000565047 MMP1P03956 469 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 GATMP50440 423 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 GPC3P51654 580 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 BTG3Q14201 252 aaPredicted RBP16.73■□□□□ 0.27
CLN3-213ENST00000565047 SLC24A5Q71RS6 500 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 POTEDQ86YR6 584 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 ZNF710Q8N1W2 664 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 BANK1Q8NDB2 785 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 ADAMTS19Q8TE59 1207 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 ADAM2Q99965 735 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 SH2D3AQ9BRG2 576 aa16.73■□□□□ 0.27
CLN3-213ENST00000565047 MAFO75444 373 aaPredicted RBP16.72■□□□□ 0.27
CLN3-213ENST00000565047 STAG3L1P0CL83 205 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 DARSP14868 501 aaKnown RBP16.72■□□□□ 0.27
CLN3-213ENST00000565047 EIF4BP23588 611 aaKnown RBP16.72■□□□□ 0.27
CLN3-213ENST00000565047 TMOD1P28289 359 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 CTNNB1P35222 781 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 KRT2P35908 639 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 PSMC5P62195 406 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 SKIV2LQ15477 1246 aaKnown RBP16.72■□□□□ 0.27
CLN3-213ENST00000565047 ZNF579Q8NAF0 562 aaKnown RBP16.72■□□□□ 0.27
CLN3-213ENST00000565047 PLVAPQ9BX97 442 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 C1orf112Q9NSG2 853 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 RNF19AQ9NV58 838 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 AKT3Q9Y243 479 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 RWDD3Q9Y3V2 267 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 ATG2AQ2TAZ0 1938 aa16.72■□□□□ 0.27
CLN3-213ENST00000565047 DNAJB1P25685 340 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 QARSP47897 775 aaKnown RBP16.71■□□□□ 0.27
CLN3-213ENST00000565047 TBC1D8BQ0IIM8 1120 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 EPHA7Q15375 998 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 PTPROQ16827 1216 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 AAK1Q2M2I8 961 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 ODR4Q5SWX8 454 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 FAM102BQ5T8I3 360 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 P2RX5Q93086 422 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 ZNF668Q96K58 619 aaPredicted RBP16.71■□□□□ 0.27
CLN3-213ENST00000565047 NAP1L4Q99733 375 aaKnown RBP16.71■□□□□ 0.27
CLN3-213ENST00000565047 ELAC1Q9H777 363 aaKnown RBP16.71■□□□□ 0.27
CLN3-213ENST00000565047 SEPT9Q9UHD8 586 aaPredicted RBP16.71■□□□□ 0.27
CLN3-213ENST00000565047 PLAGL2Q9UPG8 496 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 LIMCH1Q9UPQ0 1083 aa16.71■□□□□ 0.27
CLN3-213ENST00000565047 DDX11L8A8MPP1 907 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 TNFRSF10AO00220 468 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 P4HBP07237 508 aaKnown RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 MTERF2Q49AM1 385 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 TCEAL5Q5H9L2 206 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 PLA2G4FQ68DD2 849 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 C4orf19Q8IY42 314 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms