RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TMEM117Q9H0C3 514 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 PSTPIP2Q9H939 334 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 CDHR5Q9HBB8 845 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 CYP26B1Q9NR63 512 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 SEC63Q9UGP8 760 aaKnown RBP8.38□□□□□ -1.07
VPS4A-203ENST00000564399 UBIAD1Q9Y5Z9 338 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 DCHS1Q96JQ0 3298 aa8.38□□□□□ -1.07
VPS4A-203ENST00000564399 GPR179Q6PRD1 2367 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 C2orf71A6NGG8 1288 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SPDYE3A6NKU9 549 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SPDYE4A6NLX3 237 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 HIP1O00291 1037 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 MAFGO15525 162 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 CXCL14O95715 111 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 LMNAP02545 664 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 ACTR2P61160 394 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 TROAPQ12815 778 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 PUM1Q14671 1186 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SART3Q15020 963 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 CWF19L1Q69YN2 538 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 KIAA1841Q6NSI8 718 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 KANK3Q6NY19 840 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 PLPPR4Q7Z2D5 763 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 KIAA0319LQ8IZA0 1049 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 LRRC43Q8N309 656 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 MRPL43Q8N983 215 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 DTWD2Q8NBA8 298 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 RNF169Q8NCN4 708 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 CTCFLQ8NI51 663 aaPredicted RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 TMEM40Q8WWA1 233 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 ACSF2Q96CM8 615 aaPredicted RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 CASD1Q96PB1 797 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 OSMRQ99650 979 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SDF4Q9BRK5 362 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SEMA4AQ9H3S1 761 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 ELAC1Q9H777 363 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 SENP2Q9HC62 589 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 JADE2Q9NQC1 790 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 DZANK1Q9NVP4 752 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 USTQ9Y2C2 406 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 MYO15AQ9UKN7 3530 aa8.37□□□□□ -1.07
VPS4A-203ENST00000564399 MAP1BP46821 2468 aaKnown RBP8.37□□□□□ -1.07
VPS4A-203ENST00000564399 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.36□□□□□ -1.07
VPS4A-203ENST00000564399 BACH1O14867 736 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 HBP1O60381 514 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 KRT37O76014 449 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 EOMESO95936 686 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 ARP10275 920 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 ZSCAN20P17040 1043 aaPredicted RBP8.36□□□□□ -1.07
VPS4A-203ENST00000564399 NPR3P17342 541 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 METAP2P50579 478 aaKnown RBP eCLIP8.36□□□□□ -1.07
VPS4A-203ENST00000564399 CRYBB1P53674 252 aaPredicted RBP8.36□□□□□ -1.07
VPS4A-203ENST00000564399 FAM189BP81408 668 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 TDGQ13569 410 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 UBE2SQ16763 222 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 KIZQ2M2Z5 673 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 TMC5Q6UXY8 1006 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 LRRC55Q6ZSA7 311 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 OTOP3Q7RTS5 596 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 RALYLQ86SE5 291 aaKnown RBP8.36□□□□□ -1.07
VPS4A-203ENST00000564399 SIX5Q8N196 739 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 CYP2W1Q8TAV3 490 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 TMEM169Q96HH4 297 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 SPZ1Q9BXG8 430 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 KCNH7Q9NS40 1196 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 PCDHA6Q9UN73 950 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 PCDHA8Q9Y5H6 950 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 R4GN57 208 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 PKD1L2Q7Z442 2459 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 FANCMQ8IYD8 2048 aa8.36□□□□□ -1.07
VPS4A-203ENST00000564399 C2orf16Q68DN1 1984 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 NT5C1B-RDH14C9J2C7 533 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 DDX39AO00148 427 aaKnown RBP8.35□□□□□ -1.07
VPS4A-203ENST00000564399 EPCAMP16422 314 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 KIF5BP33176 963 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 ALDH7A1P49419 539 aaKnown RBP8.35□□□□□ -1.07
VPS4A-203ENST00000564399 SLC26A2P50443 739 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 ZNF484Q5JVG2 852 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 FAM160B1Q5W0V3 765 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 B4GALNT3Q6L9W6 998 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 CCDC149Q6ZUS6 474 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 TRMT1LQ7Z2T5 733 aaKnown RBP8.35□□□□□ -1.07
VPS4A-203ENST00000564399 CABP7Q86V35 215 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 FAM228AQ86W67 206 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 CKAP2LQ8IYA6 745 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 VPS52Q8N1B4 723 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 SLC39A11Q8N1S5 342 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 METTL13Q8N6R0 699 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 AUTS2Q8WXX7 1259 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 RIN2Q8WYP3 895 aaPredicted RBP8.35□□□□□ -1.07
VPS4A-203ENST00000564399 MXRA8Q9BRK3 442 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 MYL10Q9BUA6 226 aa8.35□□□□□ -1.07
VPS4A-203ENST00000564399 DOCK8Q8NF50 2099 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 DENND4AQ7Z401 1863 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 NFASCO94856 1347 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 DMXL1Q9Y485 3027 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 VTNP04004 478 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 CFHP08603 1231 aa8.34□□□□□ -1.07
VPS4A-203ENST00000564399 HDAC1Q13547 482 aaPredicted RBP8.34□□□□□ -1.07
VPS4A-203ENST00000564399 DSC3Q14574 896 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms