RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PPP1R9AQ9ULJ8 1098 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 PITPNM2Q9BZ72 1349 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 IGSF9BQ9UPX0 1349 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 GOLGA6L7A0A1B0GV03 622 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SMIM23A6NLE4 172 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 EVI5O60447 810 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SPIRE1Q08AE8 756 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 USH1GQ495M9 461 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 RC3H1Q5TC82 1133 aaKnown RBP14.37□□□□□ -0.11
CLN3-210ENST00000563874 BARGINQ6ZT62 677 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 EP400NLQ6ZTU2 488 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 LNX1Q8TBB1 728 aaPredicted RBP14.37□□□□□ -0.11
CLN3-210ENST00000563874 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.37□□□□□ -0.115e-8■■■■■ 65.3
CLN3-210ENST00000563874 GLG1Q92896 1179 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 OSBPL7Q9BZF2 842 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 BCS1LQ9Y276 419 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 STXBP5LQ9Y2K9 1186 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 UTP11Q9Y3A2 253 aaKnown RBP14.37□□□□□ -0.11
CLN3-210ENST00000563874 CCDC188H7C350 402 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 CALUO43852 315 aaPredicted RBP14.36□□□□□ -0.11
CLN3-210ENST00000563874 PRKCIP41743 596 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 ARHGAP4P98171 946 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 SETQ01105 290 aaPredicted RBP14.36□□□□□ -0.11
CLN3-210ENST00000563874 BIRC3Q13489 604 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 GPATCH4Q5T3I0 446 aaKnown RBP14.36□□□□□ -0.11
CLN3-210ENST00000563874 PRR5LQ6MZQ0 368 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 CCDC26Q8TAB7 109 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 CYP2W1Q8TAV3 490 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 SLC35G2Q8TBE7 412 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 NCAPGQ9BPX3 1015 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 YY1AP1Q9H869 796 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 RGL1Q9NZL6 768 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 SUCLA2Q9P2R7 463 aaPredicted RBP14.36□□□□□ -0.11
CLN3-210ENST00000563874 PLIN4Q96Q06 1357 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 F8VZ95 297 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 DNM1LO00429 736 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 ATP2B4P23634 1241 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 SLFN11Q7Z7L1 901 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 TBC1D16Q8TBP0 767 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 PIGOQ8TEQ8 1089 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 LMBR1Q8WVP7 490 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 SEC16BQ96JE7 1060 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 USP40Q9NVE5 1235 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 AMFRQ9UKV5 643 aa14.36□□□□□ -0.11
CLN3-210ENST00000563874 FAM86B1E9PN63 330 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 PDXKO00764 312 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 MEIS2O14770 477 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 FAM86B2P0C5J1 330 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 JAM2P57087 298 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 ZC2HC1CQ53FD0 456 aaPredicted RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 DCAF12L1Q5VU92 463 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 C15orf52Q6ZUT6 534 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 EPM2AIP1Q7L775 607 aaPredicted RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 RASGEF1CQ8N431 466 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SYT2Q8N9I0 419 aaPredicted RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 EIF1ADQ8N9N8 165 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 ETNPPLQ8TBG4 499 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 HES6Q96HZ4 224 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SLC40A1Q9NP59 571 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 KLC4Q9NSK0 619 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SHBGP04278 402 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 MTMR3Q13615 1198 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 COG2Q14746 738 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 TRAPPC3LQ5T215 181 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 AADACL2Q6P093 401 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 CCDC91Q7Z6B0 441 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SLFN12Q8IYM2 578 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 UHMK1Q8TAS1 419 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 SLITRK6Q9H5Y7 841 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 ERVK-5Q9HDB9 667 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SWAP70Q9UH65 585 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 PNMA2Q9UL42 364 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 NENFQ9UMX5 172 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 TLDC2A0PJX2 215 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 RGL2O15211 777 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 CAND2O75155 1236 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 TBCAO75347 108 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 NMT1P30419 496 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 STAT1P42224 750 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 CACNB3P54284 484 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 NFIAQ12857 509 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 CPLX4Q7Z7G2 160 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 PALB2Q86YC2 1186 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 ZFPM1Q8IX07 1006 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 FMO2Q99518 471 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 TYW1Q9NV66 732 aaKnown RBP14.35□□□□□ -0.11
CLN3-210ENST00000563874 TAS2R14Q9NYV8 317 aa14.35□□□□□ -0.11
CLN3-210ENST00000563874 SPDYE3A6NKU9 549 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 BHMG1C9JSJ3 638 aaPredicted RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 ZBTB39O15060 712 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 HOXA13P31271 388 aaPredicted RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 SYCE1Q8N0S2 351 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 ATP8B4Q8TF62 1192 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 TBC1D22AQ8WUA7 517 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 ARHGEF26Q96DR7 871 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 TMOD4Q9NZQ9 345 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 CHORDC1Q9UHD1 332 aaPredicted RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 RPL13P26373 211 aaKnown RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 RPA1P27694 616 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 BYSLQ13895 437 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms