RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TEKT3Q9BXF9 490 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 ADAMTS10Q9H324 1103 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 UNC45AQ9H3U1 944 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 ELAC1Q9H777 363 aaKnown RBP19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 LRFN2Q9ULH4 789 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 GINS2Q9Y248 185 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 PCDHB7Q9Y5E2 793 aa19.44■□□□□ 0.7
VPS9D1-203ENST00000563798 EVPLQ92817 2033 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 TMOD1P28289 359 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 TARBP2Q15633 366 aaKnown RBP19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 PTCRAQ6ISU1 281 aaPredicted RBP19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 EFCAB12Q6NXP0 572 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 METTL13Q8N6R0 699 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 ETNPPLQ8TBG4 499 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 SPPL3Q8TCT6 385 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 OSMRQ99650 979 aa19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 NIFKQ9BYG3 293 aaKnown RBP19.43■□□□□ 0.7
VPS9D1-203ENST00000563798 DENND3A2RUS2 1198 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 VTNP04004 478 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 ITGB1P05556 798 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 LTBRP36941 435 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 ANAPC15P60006 121 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 PRKCEQ02156 737 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 HYAL1Q12794 435 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 UGCGQ16739 394 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 MAP7D2Q96T17 732 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 LARP6Q9BRS8 491 aaKnown RBP19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 ALG13Q9NP73 1137 aaKnown RBP19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 CD320Q9NPF0 282 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 TMEM161AQ9NX61 479 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 ATG2AQ2TAZ0 1938 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 WDR81Q562E7 1941 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 STK36Q9NRP7 1315 aa19.42■□□□□ 0.7
VPS9D1-203ENST00000563798 CDKL5O76039 1030 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 STBD1O95210 358 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 TDP2O95551 362 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 NEFLP07196 543 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 IL9P15248 144 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 COL9A1P20849 921 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 EIF4BP23588 611 aaKnown RBP19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 GATMP50440 423 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 CLCN3P51790 818 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 SCRN1Q12765 414 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 STK3Q13188 491 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 NONOQ15233 471 aaKnown RBP eCLIP19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 ERICH6BQ5W0A0 696 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 KRT25Q7Z3Z0 450 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 KLHL23Q8NBE8 558 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 AIFM3Q96NN9 605 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 CEP89Q96ST8 783 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 PHF20Q9BVI0 1012 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 EPHX3Q9H6B9 360 aa19.41■□□□□ 0.7
VPS9D1-203ENST00000563798 H3BQ06 376 aaPredicted RBP19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 PFKFB2O60825 505 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 DNAJB1P25685 340 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 NLRP11P59045 1033 aaKnown RBP19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 PAN2Q504Q3 1202 aaKnown RBP19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 XKR3Q5GH77 459 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 TRMT1LQ7Z2T5 733 aaKnown RBP19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 MIER3Q7Z3K6 550 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 GJA10Q969M2 543 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 CLDND1Q9NY35 253 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 FAM50BQ9Y247 325 aa19.4■□□□□ 0.7
VPS9D1-203ENST00000563798 KIAA1671Q9BY89 1806 aa19.39■□□□□ 0.7
VPS9D1-203ENST00000563798 MYO7AQ13402 2215 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 IGKV6-21A0A0C4DH24 114 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 PI4K2BG5E9Z4 385 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 CHMP2AO43633 222 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 GPC3P51654 580 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 CDC42EP1Q00587 391 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 UBE3AQ05086 875 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 FAM102BQ5T8I3 360 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 PPP4R3AQ6IN85 833 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 GJD3Q8N144 294 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 LRRC71Q8N4P6 559 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 KHSRPQ92945 711 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 PPP1R16BQ96T49 567 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 SLKQ9H2G2 1235 aaPredicted RBP19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 ATP6V0A4Q9HBG4 840 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 PPP4R2Q9NY27 417 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 PRKAG3Q9UGI9 489 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 DDX25Q9UHL0 483 aaKnown RBP19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 TPCN1Q9ULQ1 816 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 AKT3Q9Y243 479 aa19.39■□□□□ 0.69
VPS9D1-203ENST00000563798 DARSP14868 501 aaKnown RBP19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 TBC1D8BQ0IIM8 1120 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 ADAM15Q13444 863 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 CSPP1Q1MSJ5 1256 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 INF2Q27J81 1249 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 FNDC1Q4ZHG4 1894 aaPredicted RBP19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 PPP2R3CQ969Q6 453 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 FAM20AQ96MK3 541 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 KCNMB3Q9NPA1 279 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 AAASQ9NRG9 546 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 KCNJ14Q9UNX9 436 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 PCDHB12Q9Y5F1 795 aa19.38■□□□□ 0.69
VPS9D1-203ENST00000563798 C19orf67A6NJJ6 358 aa19.37■□□□□ 0.69
VPS9D1-203ENST00000563798 TBKBP1A7MCY6 615 aa19.37■□□□□ 0.69
VPS9D1-203ENST00000563798 HOXA2O43364 376 aa19.37■□□□□ 0.69
VPS9D1-203ENST00000563798 GCFC2P16383 781 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms