RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 WTAPQ15007 396 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 PDE12Q6L8Q7 609 aaKnown RBP11.88□□□□□ -0.51
SF3B3-204ENST00000563739 KCNT2Q6UVM3 1135 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 SLC24A5Q71RS6 500 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 PLPPR4Q7Z2D5 763 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ZNF598Q86UK7 904 aaKnown RBP11.88□□□□□ -0.51
SF3B3-204ENST00000563739 UBALD2Q8IYN6 164 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ZNF654Q8IZM8 581 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ADSSL1Q8N142 457 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 SLC39A11Q8N1S5 342 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 MICAL1Q8TDZ2 1067 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 PGBD1Q96JS3 809 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 PPP1R16BQ96T49 567 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 OSMRQ99650 979 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 VN1R3Q9BXE9 311 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ADAM7Q9H2U9 754 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 KCNH7Q9NS40 1196 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 TPRP12270 2363 aaKnown RBP11.87□□□□□ -0.51
SF3B3-204ENST00000563739 DHX15O43143 795 aaKnown RBP11.87□□□□□ -0.51
SF3B3-204ENST00000563739 RPS6KA5O75582 802 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 RPLP2P05387 115 aaKnown RBP11.87□□□□□ -0.51
SF3B3-204ENST00000563739 HOXB8P17481 243 aaPredicted RBP11.87□□□□□ -0.51
SF3B3-204ENST00000563739 KLRC1P26715 233 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 KIAA1841Q6NSI8 718 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 ABHD15Q6UXT9 468 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 CHD1LQ86WJ1 897 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 ZDHHC14Q8IZN3 488 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 RMDN1Q96DB5 314 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 CDHR1Q96JP9 859 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 MAP3K14Q99558 947 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 MXRA8Q9BRK3 442 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 TMEM117Q9H0C3 514 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 ELAC1Q9H777 363 aaKnown RBP11.87□□□□□ -0.51
SF3B3-204ENST00000563739 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 C1orf112Q9NSG2 853 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 LRFN2Q9ULH4 789 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 PCDHA6Q9UN73 950 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 PCDHB7Q9Y5E2 793 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 PCDHA8Q9Y5H6 950 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 PATJQ8NI35 1801 aa11.87□□□□□ -0.51
SF3B3-204ENST00000563739 FSD2A1L4K1 749 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 N4BP1O75113 896 aaKnown RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 EPCAMP16422 314 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 RXRAP19793 462 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 AOC1P19801 751 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 STAT5BP51692 787 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 KIZQ2M2Z5 673 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 SPOUT1Q5T280 376 aaKnown RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 B4GALNT3Q6L9W6 998 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 CCDC105Q8IYK2 499 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 NME8Q8N427 588 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 MRPL43Q8N983 215 aaKnown RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 SLC22A17Q8WUG5 538 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 AUTS2Q8WXX7 1259 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 CASP10Q92851 521 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 NKD2Q969F2 451 aaPredicted RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 ZBP1Q9H171 429 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 AGO4Q9HCK5 861 aaKnown RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 NGRNQ9NPE2 291 aaKnown RBP11.86□□□□□ -0.51
SF3B3-204ENST00000563739 ENTPD7Q9NQZ7 604 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 SPTBN2O15020 2390 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 CNTNAP5Q8WYK1 1306 aa11.86□□□□□ -0.51
SF3B3-204ENST00000563739 COL1A2P08123 1366 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 M0QZ92 97 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 SH2B2O14492 632 aaPredicted RBP11.85□□□□□ -0.51
SF3B3-204ENST00000563739 DDAH1O94760 285 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 VTNP04004 478 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 CENPBP07199 599 aaPredicted RBP11.85□□□□□ -0.51
SF3B3-204ENST00000563739 SMARCA1P28370 1054 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 CLCN5P51795 746 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 RARS2Q5T160 578 aaKnown RBP11.85□□□□□ -0.51
SF3B3-204ENST00000563739 MCTP2Q6DN12 878 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 ZBTB33Q86T24 672 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 ECHDC2Q86YB7 292 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 RAB11FIP4Q86YS3 637 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 CRYGNQ8WXF5 182 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 RRP36Q96EU6 259 aaKnown RBP11.85□□□□□ -0.51
SF3B3-204ENST00000563739 ADAMTS10Q9H324 1103 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 PSTPIP2Q9H939 334 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 ATP6V0A4Q9HBG4 840 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 LIMD1Q9UGP4 676 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 GINS2Q9Y248 185 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 NR2E1Q9Y466 385 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 ACACBO00763 2458 aa11.85□□□□□ -0.51
SF3B3-204ENST00000563739 DOCK6Q96HP0 2047 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 USP24Q9UPU5 2620 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 IGLV3-22A0A075B6J6 115 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 DENND3A2RUS2 1198 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 NT5C1B-RDH14C9J2C7 533 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 NARSO43776 548 aaKnown RBP11.84□□□□□ -0.51
SF3B3-204ENST00000563739 EOMESO95936 686 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 CRYBB1P53674 252 aaPredicted RBP11.84□□□□□ -0.51
SF3B3-204ENST00000563739 ITIH3Q06033 890 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 FUT2Q10981 343 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 ANGPT1Q15389 498 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 WWC2Q6AWC2 1192 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 LRRC43Q8N309 656 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 CUL5Q93034 780 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 ZNF558Q96NG5 402 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 NECTIN4Q96NY8 510 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms