RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 GAP43P17677 238 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 NMT1P30419 496 aaKnown RBP11.33□□□□□ -0.6
RNF40-204ENST00000563683 USP11P51784 963 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 ORC2Q13416 577 aaPredicted RBP11.33□□□□□ -0.6
RNF40-204ENST00000563683 NAALADL2Q58DX5 795 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 WDR11Q9BZH6 1224 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 TTYH3Q9C0H2 523 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 GDF3Q9NR23 364 aa11.33□□□□□ -0.6
RNF40-204ENST00000563683 PPP1R12AO14974 1030 aaPredicted RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 TRIM49P0CI25 452 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 TRIM49CP0CI26 452 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 HDLBPQ00341 1268 aaKnown RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 PPP4R3CPQ6ZMV5 832 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 SGSM3Q96HU1 749 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 ZNF233A6NK53 670 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 PGRMC1O00264 195 aaKnown RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 SLC9A1P19634 815 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 SCP2P22307 547 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 CLNS1AP54105 237 aaKnown RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 NBPF9Q3BBW0 867 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 PPP1R18Q6NYC8 613 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 CYB5D1Q6P9G0 228 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 PHLDB2Q86SQ0 1253 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 CEP120Q8N960 986 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 PROCA1Q8NCQ7 364 aaPredicted RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 POMGNT1Q8WZA1 660 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 CYFIP2Q96F07 1278 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 FAM20AQ96MK3 541 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 EIF2AK1Q9BQI3 630 aaKnown RBP11.32□□□□□ -0.6
RNF40-204ENST00000563683 GOLPH3Q9H4A6 298 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 CAPN6Q9Y6Q1 641 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 GMNCA6NCL1 334 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 KIF4AO95239 1232 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 DNAJC12Q9UKB3 198 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 DISP2A7MBM2 1401 aa11.32□□□□□ -0.6
RNF40-204ENST00000563683 FXR2P51116 673 aaKnown RBP eCLIP11.31□□□□□ -0.61e-6■■□□□ 13.4
RNF40-204ENST00000563683 SEC24CP53992 1094 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 STRN3Q13033 797 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 LRIG3Q6UXM1 1119 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 SLC30A10Q6XR72 485 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 RNF10Q8N5U6 811 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 PLAGL2Q9UPG8 496 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 ATP8A1Q9Y2Q0 1164 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 PTPN22Q9Y2R2 807 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 PARP4Q9UKK3 1724 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 TAL1P17542 331 aaPredicted RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 LMNB1P20700 586 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 C6orf89Q6UWU4 347 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 KIAA0895Q8NCT3 520 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 ZNF384Q8TF68 577 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 RSRC1Q96IZ7 334 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 ERGIC2Q96RQ1 377 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 DUSP9Q99956 384 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 REEP2Q9BRK0 252 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 ZNF341Q9BYN7 854 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 RAB17Q9H0T7 212 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 RBM12Q9NTZ6 932 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 KIF3CO14782 793 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 KSR1Q8IVT5 923 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 CACNA2D3Q8IZS8 1091 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 MAGOHBQ96A72 148 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 MTRQ99707 1265 aa11.31□□□□□ -0.6
RNF40-204ENST00000563683 DDX47Q9H0S4 455 aaKnown RBP11.31□□□□□ -0.6
RNF40-204ENST00000563683 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.31□□□□□ -0.6
RNF40-204ENST00000563683 ESYT2A0FGR8 921 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 GRID2IPA4D2P6 1211 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 HNRNPDLO14979 420 aaKnown RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 GCLMP48507 274 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 CARSP49589 748 aaKnown RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 PLTPP55058 493 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 PEX3P56589 373 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 ZNF365Q70YC5 407 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 SLC51AQ86UW1 340 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 GLYCTKQ8IVS8 523 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 FUKQ8N0W3 1084 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 CCDC77Q9BR77 488 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 DDX4Q9NQI0 724 aaKnown RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 ADAMTS3O15072 1205 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 NEBLO76041 1014 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 MYBP10242 640 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 HNRNPH3P31942 346 aaKnown RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 ITGB3BPQ13352 177 aaPredicted RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 CENPPQ6IPU0 288 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 ATP6V0A4Q9HBG4 840 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 ZBTB12Q9Y330 459 aaPredicted RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 MYH7P12883 1935 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 ABCB11O95342 1321 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 FGGP02679 453 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 ZC2HC1CQ53FD0 456 aaPredicted RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 SLC27A3Q5K4L6 730 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 EP400NLQ6ZTU2 488 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 CATSPER3Q86XQ3 398 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 IWS1Q96ST2 819 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 TRIM6Q9C030 488 aaPredicted RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 RIOX1Q9H6W3 641 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 TYW1Q9NV66 732 aaKnown RBP11.3□□□□□ -0.6
RNF40-204ENST00000563683 LRP6O75581 1613 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 KLRC1P26715 233 aa11.3□□□□□ -0.6
RNF40-204ENST00000563683 PPP2R5AQ15172 486 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms