RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 KLHL10Q6JEL2 608 aa15.03■□□□□ -0
VPS39-206ENST00000562662 GUF1Q8N442 669 aaKnown RBP15.03■□□□□ -0
VPS39-206ENST00000562662 NELFBQ8WX92 580 aa15.03■□□□□ -0
VPS39-206ENST00000562662 HSD3B7Q9H2F3 369 aa15.03■□□□□ -0
VPS39-206ENST00000562662 TBC1D7Q9P0N9 293 aa15.03■□□□□ -0
VPS39-206ENST00000562662 SEL1LQ9UBV2 794 aa15.03■□□□□ -0
VPS39-206ENST00000562662 TSKSQ9UJT2 592 aa15.03■□□□□ -0
VPS39-206ENST00000562662 PPME1Q9Y570 386 aa15.03■□□□□ -0
VPS39-206ENST00000562662 ZBTB42B2RXF5 422 aa15.02■□□□□ -0
VPS39-206ENST00000562662 ADCY3O60266 1144 aa15.02■□□□□ -0
VPS39-206ENST00000562662 HMGCRP04035 888 aa15.02■□□□□ -0
VPS39-206ENST00000562662 ZNF286BP0CG31 522 aa15.02■□□□□ -0
VPS39-206ENST00000562662 STX17P56962 302 aa15.02■□□□□ -0
VPS39-206ENST00000562662 ARHGEF6Q15052 776 aa15.02■□□□□ -0
VPS39-206ENST00000562662 LRRC41Q15345 812 aa15.02■□□□□ -0
VPS39-206ENST00000562662 DGKDQ16760 1214 aa15.02■□□□□ -0
VPS39-206ENST00000562662 MAP3K21Q5TCX8 1036 aa15.02■□□□□ -0
VPS39-206ENST00000562662 MAEAQ7L5Y9 396 aa15.02■□□□□ -0
VPS39-206ENST00000562662 EPM2AIP1Q7L775 607 aaPredicted RBP15.02■□□□□ -0
VPS39-206ENST00000562662 MYCT1Q8N699 235 aa15.02■□□□□ -0
VPS39-206ENST00000562662 MCPH1Q8NEM0 835 aa15.02■□□□□ -0
VPS39-206ENST00000562662 PXYLP1Q8TE99 480 aa15.02■□□□□ -0
VPS39-206ENST00000562662 DHTKD1Q96HY7 919 aaPredicted RBP15.02■□□□□ -0
VPS39-206ENST00000562662 DHX33Q9H6R0 707 aaKnown RBP15.02■□□□□ -0
VPS39-206ENST00000562662 ATP6V0A4Q9HBG4 840 aa15.02■□□□□ -0
VPS39-206ENST00000562662 GPRC5CQ9NQ84 441 aa15.02■□□□□ -0
VPS39-206ENST00000562662 WBP1LQ9NX94 342 aa15.02■□□□□ -0
VPS39-206ENST00000562662 ERAP1Q9NZ08 941 aa15.02■□□□□ -0
VPS39-206ENST00000562662 RWDD2AQ9UIY3 292 aa15.02■□□□□ -0
VPS39-206ENST00000562662 TRIP12Q14669 1992 aaPredicted RBP15.02□□□□□ -0.01
VPS39-206ENST00000562662 SCN10AQ9Y5Y9 1956 aa15.02□□□□□ -0.01
VPS39-206ENST00000562662 GOLGA6L19H0YKK7 550 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 PSMA7O14818 248 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 SEPT4O43236 478 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 HBP1O60381 514 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 DUSP11O75319 330 aaKnown RBP15.01□□□□□ -0.01
VPS39-206ENST00000562662 PRKAR2AP13861 404 aaKnown RBP15.01□□□□□ -0.01
VPS39-206ENST00000562662 CCNE1P24864 410 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 RFC5P40937 340 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 CASP5P51878 434 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 PMS1P54277 932 aaKnown RBP15.01□□□□□ -0.01
VPS39-206ENST00000562662 PRMT2P55345 433 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 IRX5P78411 483 aaPredicted RBP15.01□□□□□ -0.01
VPS39-206ENST00000562662 EMC2Q15006 297 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 FAM102BQ5T8I3 360 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 RAET1EQ8TD07 263 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 SCFD1Q8WVM8 642 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 DRC1Q96MC2 740 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 BEGAINQ9BUH8 593 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 UPF3AQ9H1J1 476 aaKnown RBP15.01□□□□□ -0.01
VPS39-206ENST00000562662 RNPEPQ9H4A4 650 aa15.01□□□□□ -0.01
VPS39-206ENST00000562662 TRIM49BA6NDI0 452 aa15□□□□□ -0.01
VPS39-206ENST00000562662 AP5Z1O43299 807 aa15□□□□□ -0.01
VPS39-206ENST00000562662 MAFO75444 373 aaPredicted RBP15□□□□□ -0.01
VPS39-206ENST00000562662 MYBP10242 640 aa15□□□□□ -0.01
VPS39-206ENST00000562662 MAPTP10636 758 aaKnown RBP15□□□□□ -0.01
VPS39-206ENST00000562662 PLS3P13797 630 aa15□□□□□ -0.01
VPS39-206ENST00000562662 CCND3P30281 292 aaPredicted RBP15□□□□□ -0.01
VPS39-206ENST00000562662 NMT1P30419 496 aaKnown RBP15□□□□□ -0.01
VPS39-206ENST00000562662 CPT1AP50416 773 aa15□□□□□ -0.01
VPS39-206ENST00000562662 POLGP54098 1239 aaPredicted RBP15□□□□□ -0.01
VPS39-206ENST00000562662 SOX10P56693 466 aa15□□□□□ -0.01
VPS39-206ENST00000562662 GJA9P57773 515 aa15□□□□□ -0.01
VPS39-206ENST00000562662 BMT2Q1RMZ1 405 aa15□□□□□ -0.01
VPS39-206ENST00000562662 ODR4Q5SWX8 454 aa15□□□□□ -0.01
VPS39-206ENST00000562662 SPATA1Q5VX52 437 aa15□□□□□ -0.01
VPS39-206ENST00000562662 CENPPQ6IPU0 288 aa15□□□□□ -0.01
VPS39-206ENST00000562662 TTI2Q6NXR4 508 aa15□□□□□ -0.01
VPS39-206ENST00000562662 MYOCDQ8IZQ8 938 aa15□□□□□ -0.01
VPS39-206ENST00000562662 DNAJC5GQ8N7S2 189 aa15□□□□□ -0.01
VPS39-206ENST00000562662 KIFAP3Q92845 792 aa15□□□□□ -0.01
VPS39-206ENST00000562662 P2RX5Q93086 422 aa15□□□□□ -0.01
VPS39-206ENST00000562662 STRA6Q9BX79 667 aa15□□□□□ -0.01
VPS39-206ENST00000562662 AP5M1Q9H0R1 490 aa15□□□□□ -0.01
VPS39-206ENST00000562662 SEMA6BQ9H3T3 888 aa15□□□□□ -0.01
VPS39-206ENST00000562662 MRPL44Q9H9J2 332 aaKnown RBP15□□□□□ -0.01
VPS39-206ENST00000562662 LARSQ9P2J5 1176 aaKnown RBP15□□□□□ -0.01
VPS39-206ENST00000562662 ZNF215Q9UL58 517 aaPredicted RBP15□□□□□ -0.01
VPS39-206ENST00000562662 TRPC6Q9Y210 931 aa15□□□□□ -0.01
VPS39-206ENST00000562662 NFE2L3Q9Y4A8 694 aa15□□□□□ -0.01
VPS39-206ENST00000562662 CEP350Q5VT06 3117 aa15□□□□□ -0.01
VPS39-206ENST00000562662 CENPFP49454 3210 aa15□□□□□ -0.01
VPS39-206ENST00000562662 COL1A2P08123 1366 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 UBE4BO95155 1302 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 IGKV6-21A0A0C4DH24 114 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 H3BRB1 525 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 EIF3DO15371 548 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS39-206ENST00000562662 PPP1R37O75864 691 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 F2P00734 622 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 NCKAP1LP55160 1127 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 RTP1P59025 263 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 NKX3-2P78367 333 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 BEX3Q00994 111 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 ZNF484Q5JVG2 852 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 ZNF720Q7Z2F6 126 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 FAM178BQ8IXR5 827 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 SLAIN1Q8ND83 568 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 ZNF507Q8TCN5 953 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 BSNDQ8WZ55 320 aa14.99□□□□□ -0.01
VPS39-206ENST00000562662 KAT2BQ92831 832 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms