RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CAND2O75155 1236 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 ZNF202O95125 648 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 MYL1P05976 194 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 SLFN14P0C7P3 912 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 CYP2C9P11712 490 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 CYP11B2P19099 503 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 ATN1P54259 1190 aaPredicted RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 NPEPPSP55786 919 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 RTP1P59025 263 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 FAM160A1Q05DH4 1040 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 PTK7Q13308 1070 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 SNX17Q15036 470 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 ECM1Q16610 540 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 GDF6Q6KF10 455 aaPredicted RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 EFCAB12Q6NXP0 572 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 ANKRD33Q7Z3H0 272 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 METTL13Q8N6R0 699 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 DIS3LQ8TF46 1054 aaKnown RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 LMBR1Q8WVP7 490 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 KIFAP3Q92845 792 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 TIGD1Q96MW7 591 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 TNMDQ9H2S6 317 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 DHX33Q9H6R0 707 aaKnown RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 SUGCTQ9HAC7 445 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 WRAP73Q9P2S5 460 aaPredicted RBP10.26□□□□□ -0.77
LDLR-210ENST00000559340 HPSEQ9Y251 543 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 GRIN2DO15399 1336 aa10.26□□□□□ -0.77
LDLR-210ENST00000559340 HTTP42858 3142 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 ZBTB39O15060 712 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 PQBP1O60828 265 aaKnown RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 PARNO95453 639 aaKnown RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 MBD3O95983 291 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 HOXC8P31273 242 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 MCM4P33991 863 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 NDUFA8P51970 172 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 SLC12A3P55017 1021 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 ADAM17P78536 824 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 TLE2Q04725 743 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 TFDP1Q14186 410 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 DHX8Q14562 1220 aaKnown RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 MCM6Q14566 821 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 MXD4Q14582 209 aaPredicted RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 EMC2Q15006 297 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 PPP2R5AQ15172 486 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 PLA2G4FQ68DD2 849 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 RINT1Q6NUQ1 792 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 FAM43BQ6ZT52 329 aaPredicted RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 UBE2Q1Q7Z7E8 422 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 GPBP1Q86WP2 473 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 ELOA2Q8IYF1 753 aaPredicted RBP10.25□□□□□ -0.77
LDLR-210ENST00000559340 CNNM3Q8NE01 707 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 CAGE1Q8TC20 777 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 IFT74Q96LB3 600 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 DRC1Q96MC2 740 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 C17orf75Q9HAS0 396 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 BLOC1S4Q9NUP1 217 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 PRKAG2Q9UGJ0 569 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 ATP11BQ9Y2G3 1177 aa10.25□□□□□ -0.77
LDLR-210ENST00000559340 A0A087WWV3 80 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 IGKV6-21A0A0C4DH24 114 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 ZBTB42B2RXF5 422 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 TREHO43280 583 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 USO1O60763 962 aaKnown RBP10.24□□□□□ -0.77
LDLR-210ENST00000559340 GADD45BO75293 160 aaPredicted RBP10.24□□□□□ -0.77
LDLR-210ENST00000559340 C22orf31O95567 290 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 CD4P01730 458 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 SCP2P22307 547 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 GUCY2CP25092 1073 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 ABCD1P33897 745 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 E2F4Q16254 413 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 TRIM60Q495X7 471 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 ODR4Q5SWX8 454 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 FAM102BQ5T8I3 360 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 KRBA2Q6ZNG9 492 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 C1orf186Q6ZWK4 172 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 KCNK18Q7Z418 384 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 RPAINQ86UA6 219 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 SERINC5Q86VE9 423 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 CCDC65Q8IXS2 484 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 FAM126BQ8IXS8 530 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 SLC17A8Q8NDX2 589 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 TRAPPC12Q8WVT3 735 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 PSPC1Q8WXF1 523 aaKnown RBP10.24□□□□□ -0.77
LDLR-210ENST00000559340 DPF3Q92784 378 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 INO80BQ9C086 356 aaPredicted RBP10.24□□□□□ -0.77
LDLR-210ENST00000559340 PDLIM7Q9NR12 457 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 LMBRD1Q9NUN5 540 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 TMEM39AQ9NV64 488 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 KBTBD4Q9NVX7 518 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 SUCLA2Q9P2R7 463 aaPredicted RBP10.24□□□□□ -0.77
LDLR-210ENST00000559340 SERTAD1Q9UHV2 236 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 ODF2LQ9ULJ1 636 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 AKT3Q9Y243 479 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 ALPK3Q96L96 1907 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 PHLPP2Q6ZVD8 1323 aa10.24□□□□□ -0.77
LDLR-210ENST00000559340 CENPFP49454 3210 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 A0A087X0B3 334 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 TMEM150BA6NC51 233 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 H0YCG3 227 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 GTPBP6O43824 516 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms