RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 NCAPH2Q6IBW4 605 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 CNKSR3Q6P9H4 555 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 MTHFD1LQ6UB35 978 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 METTL13Q8N6R0 699 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 ATP8B4Q8TF62 1192 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 TIFAQ96CG3 184 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 RIT2Q99578 217 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 TTYH1Q9H313 450 aaPredicted RBP10.86□□□□□ -0.67
SPG11-214ENST00000558989 CERS4Q9HA82 394 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 YBX2Q9Y2T7 364 aaKnown RBP10.86□□□□□ -0.67
SPG11-214ENST00000558989 CDY2AQ9Y6F7 541 aa10.86□□□□□ -0.67
SPG11-214ENST00000558989 KIF28PB7ZC32 967 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 EML1O00423 815 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 ZNF862O60290 1169 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 UPP2O95045 317 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 C7P10643 843 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 MCM7P33993 719 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 JAK3P52333 1124 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 HMGN5P82970 282 aaKnown RBP10.85□□□□□ -0.67
SPG11-214ENST00000558989 RBL2Q08999 1139 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 ZNF174Q15697 407 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 MCTP1Q6DN14 999 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 MOXD1Q6UVY6 613 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.85□□□□□ -0.67
SPG11-214ENST00000558989 RSPH3Q86UC2 560 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 HAS1Q92839 578 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 TNPO1Q92973 898 aaKnown RBP10.85□□□□□ -0.67
SPG11-214ENST00000558989 MBOAT7Q96N66 472 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 SUGCTQ9HAC7 445 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 BMP2KQ9NSY1 1161 aaPredicted RBP10.85□□□□□ -0.67
SPG11-214ENST00000558989 SEPT9Q9UHD8 586 aaPredicted RBP10.85□□□□□ -0.67
SPG11-214ENST00000558989 MSRAQ9UJ68 235 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 MAFBQ9Y5Q3 323 aaPredicted RBP10.85□□□□□ -0.67
SPG11-214ENST00000558989 ARID2Q68CP9 1835 aa10.85□□□□□ -0.67
SPG11-214ENST00000558989 IGSF9BQ9UPX0 1349 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MBLAC1A4D2B0 266 aaPredicted RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 OATP04181 439 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 GJB2P29033 226 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 TXKP42681 527 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 WDR5P61964 334 aaKnown RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 IKBKEQ14164 716 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 TMEM266Q2M3C6 531 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MTERF2Q49AM1 385 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 EGFLAMQ63HQ2 1017 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 PPP4R3AQ6IN85 833 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 TAF2Q6P1X5 1199 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MYOCDQ8IZQ8 938 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 LRRC71Q8N4P6 559 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MYLIPQ8WY64 445 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 ZBED2Q9BTP6 218 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 SEMA6BQ9H3T3 888 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MTMR10Q9NXD2 777 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 DDX11L8A8MPP1 907 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 ZBTB42B2RXF5 422 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 M0QZ92 97 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 BAG4O95429 457 aaKnown RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 CXCL10P02778 98 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 VTNP04004 478 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 GCFC2P16383 781 aaKnown RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 SFNP31947 248 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 SLC26A2P50443 739 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 CLCN3P51790 818 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 MRPS6P82932 125 aaKnown RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 CYP4A11Q02928 519 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 CALCRLQ16602 461 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 ZNF484Q5JVG2 852 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 PLA2G4FQ68DD2 849 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 FBXO18Q8NFZ0 1043 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 SEPT8Q92599 483 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 GUCD1Q96NT3 240 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 PLCD4Q9BRC7 762 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 ZNF576Q9H609 170 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 KCNMB3Q9NPA1 279 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 NRBP2Q9NSY0 501 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 TFIP11Q9UBB9 837 aaKnown RBP10.84□□□□□ -0.67
SPG11-214ENST00000558989 PCDHA2Q9Y5H9 948 aa10.84□□□□□ -0.67
SPG11-214ENST00000558989 A0A087WWV3 80 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 NEMFO60524 1076 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 PARNO95453 639 aaKnown RBP10.83□□□□□ -0.68
SPG11-214ENST00000558989 CA3P07451 260 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 CD52P31358 61 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 MGAT3Q09327 533 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 CTTNQ14247 550 aaKnown RBP10.83□□□□□ -0.68
SPG11-214ENST00000558989 LPIN1Q14693 890 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 GRIN2CQ14957 1233 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 PLEKHG4Q58EX7 1191 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 EFCAB12Q6NXP0 572 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 SPRED2Q7Z698 418 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 NAP1L4Q99733 375 aaKnown RBP10.83□□□□□ -0.68
SPG11-214ENST00000558989 IFIH1Q9BYX4 1025 aaKnown RBP10.83□□□□□ -0.68
SPG11-214ENST00000558989 TMEM60Q9H2L4 133 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 PRDM12Q9H4Q4 367 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 SLC28A3Q9HAS3 691 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 CDHR5Q9HBB8 845 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 RGL1Q9NZL6 768 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 VAV3Q9UKW4 847 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 SMC3Q9UQE7 1217 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 AKT3Q9Y243 479 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 TRPV2Q9Y5S1 764 aa10.83□□□□□ -0.68
SPG11-214ENST00000558989 NLRC5Q86WI3 1866 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms