RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TRAK2O60296 914 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 USO1O60763 962 aaKnown RBP10.69□□□□□ -0.7
CUX1-216ENST00000558469 KRT18P05783 430 aaKnown RBP10.69□□□□□ -0.7
CUX1-216ENST00000558469 TIE1P35590 1138 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 ATN1P54259 1190 aaPredicted RBP10.69□□□□□ -0.7
CUX1-216ENST00000558469 AMPD3Q01432 767 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 RAD51AP2Q09MP3 1159 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 PPFIA1Q13136 1202 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 TARBP2Q15633 366 aaKnown RBP10.69□□□□□ -0.7
CUX1-216ENST00000558469 GRIK4Q16099 956 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 KLHL40Q2TBA0 621 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 ZNF484Q5JVG2 852 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 RINT1Q6NUQ1 792 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 PADI6Q6TGC4 694 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 CCDC34Q96HJ3 373 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 GLT1D1Q96MS3 346 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 MTRQ99707 1265 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 RUSC1Q9BVN2 902 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 LRRC27Q9C0I9 530 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 TNMDQ9H2S6 317 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 SETD4Q9NVD3 440 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 KBTBD4Q9NVX7 518 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 HDAC6Q9UBN7 1215 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 HOOK1Q9UJC3 728 aaKnown RBP10.69□□□□□ -0.7
CUX1-216ENST00000558469 NRCAMQ92823 1304 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 RRN3P2A6NIE6 340 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 DGAT1O75907 488 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 CYP11B2P19099 503 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 CASP1P29466 404 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 POLGP54098 1239 aaPredicted RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 MDM2Q00987 491 aaPredicted RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 TBC1D8BQ0IIM8 1120 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 PNOCQ13519 176 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 CUL4BQ13620 913 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 ITGA7Q13683 1181 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 POSTNQ15063 836 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 ARSHQ5FYA8 562 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 FAM47CQ5HY64 1035 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 MARCH8Q5T0T0 291 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 COL13A1Q5TAT6 717 aaPredicted RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 CAVIN1Q6NZI2 390 aaKnown RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 C1orf186Q6ZWK4 172 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 MAEAQ7L5Y9 396 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 DYMQ7RTS9 669 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 SH3RF1Q7Z6J0 888 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 DDX12PQ92771 950 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 ERCC4Q92889 916 aaPredicted RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 CEP89Q96ST8 783 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 C7orf25Q9BPX7 421 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 SENP6Q9GZR1 1112 aaPredicted RBP10.68□□□□□ -0.7
CUX1-216ENST00000558469 NUP62CLQ9H1M0 184 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 BLZF1Q9H2G9 400 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 CLSTN2Q9H4D0 955 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 POLD4Q9HCU8 107 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 STARD7Q9NQZ5 370 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 PPME1Q9Y570 386 aa10.68□□□□□ -0.7
CUX1-216ENST00000558469 GRIN2DO15399 1336 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 A0A0U1RQG5 324 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 C17orf102A2RUQ5 167 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 GTPBP6O43824 516 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 MAFO75444 373 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 GNAT1P11488 350 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 KLRC1P26715 233 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 RFC5P40937 340 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 SOX10P56693 466 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 ZNF200P98182 395 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 GIT2Q14161 759 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 HIC1Q14526 733 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 EMC2Q15006 297 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 NFRKBQ6P4R8 1299 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 MTHFD1LQ6UB35 978 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 ELOA2Q8IYF1 753 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 EXOC8Q8IYI6 725 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 METTL13Q8N6R0 699 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 ANKLE1Q8NAG6 615 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 DIS3LQ8TF46 1054 aaKnown RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 LMBR1Q8WVP7 490 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 SLC7A3Q8WY07 619 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 SYAP1Q96A49 352 aaPredicted RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 ZBTB10Q96DT7 871 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 TRIM9Q9C026 710 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 DHX33Q9H6R0 707 aaKnown RBP10.67□□□□□ -0.7
CUX1-216ENST00000558469 SUGCTQ9HAC7 445 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 ATP6V0A4Q9HBG4 840 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 PDLIM7Q9NR12 457 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 KCND2Q9NZV8 630 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 TMEM63CQ9P1W3 806 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 GTF2IRD1Q9UHL9 959 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 TUBE1Q9UJT0 475 aa10.67□□□□□ -0.7
CUX1-216ENST00000558469 SFI1A8K8P3 1242 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 MAGEB2O15479 319 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 HIP1RO75146 1068 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 C22orf31O95567 290 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 MYL1P05976 194 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 IDEP14735 1019 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 CAPN2P17655 700 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 GUCY2CP25092 1073 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 HOXC8P31273 242 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 ASIC1P78348 528 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 DPYDQ12882 1025 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms