RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 JAK2O60674 1132 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 RPS6KA5O75582 802 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 LARGE1O95461 756 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 ZSCAN20P17040 1043 aaPredicted RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 TERF1P54274 439 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 NOSTRINQ8IVI9 506 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 MYOCDQ8IZQ8 938 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 NIFKQ9BYG3 293 aaKnown RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 GINS2Q9Y248 185 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 KAT6AQ92794 2004 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 DENND3A2RUS2 1198 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 GJB5O95377 273 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 BMP15O95972 392 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 GHRP10912 638 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 NCLP19338 710 aaKnown RBP9.69□□□□□ -0.86
USP3-208ENST00000558285 SFPQP23246 707 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP3-208ENST00000558285 FOSBP53539 338 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 POLGP54098 1239 aaPredicted RBP9.69□□□□□ -0.86
USP3-208ENST00000558285 NR5A1Q13285 461 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 NPY5RQ15761 445 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 RILPL1Q5EBL4 403 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 FBXO47Q5MNV8 452 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 MARCH8Q5T0T0 291 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 MCTP1Q6DN14 999 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 NCAPH2Q6IBW4 605 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 EFCAB12Q6NXP0 572 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 C4orf19Q8IY42 314 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 TMX3Q96JJ7 454 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 FAM161BQ96MY7 647 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 CDX2Q99626 313 aaPredicted RBP9.69□□□□□ -0.86
USP3-208ENST00000558285 GCOM2Q9BZD3 368 aaPredicted RBP9.69□□□□□ -0.86
USP3-208ENST00000558285 NKX2-4Q9H2Z4 354 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 TTC12Q9H892 705 aaPredicted RBP9.69□□□□□ -0.86
USP3-208ENST00000558285 SUGCTQ9HAC7 445 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 DACT1Q9NYF0 836 aa9.69□□□□□ -0.86
USP3-208ENST00000558285 ASAP2O43150 1006 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 SLC37A4O43826 429 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 C22orf31O95567 290 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 CHRNA1P02708 482 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 SKIP12755 728 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 XRCC6P12956 609 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP3-208ENST00000558285 MCM7P33993 719 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TXKP42681 527 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TFDP1Q14186 410 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 PCBP1Q15365 356 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP3-208ENST00000558285 PTPROQ16827 1216 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TTC38Q5R3I4 469 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 RUFY4Q6ZNE9 571 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 Q7L0L9 218 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TRMT1LQ7Z2T5 733 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 ZNF410Q86VK4 478 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 OXER1Q8TDS5 423 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 NLRP7Q8WX94 980 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 CEP170P1Q96L14 293 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TGS1Q96RS0 853 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 AAASQ9NRG9 546 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 CA3P07451 260 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 OR52Z1P0C646 297 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 CHRM1P11229 460 aaPredicted RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 ATP2B1P20020 1258 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 MUTP22033 750 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 YWHABP31946 246 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 RBM10P98175 930 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 NFX1Q12986 1120 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 LPIN1Q14693 890 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 MTERF2Q49AM1 385 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TRAF7Q6Q0C0 670 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 NPAS4Q8IUM7 802 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 KCTD17Q8N5Z5 321 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 TRAPPC12Q8WVT3 735 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 PSPC1Q8WXF1 523 aaKnown RBP9.68□□□□□ -0.86
USP3-208ENST00000558285 UIMC1Q96RL1 719 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 KIF2CQ99661 725 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 LXNQ9BS40 222 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 CYP26B1Q9NR63 512 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 PCDHB7Q9Y5E2 793 aa9.68□□□□□ -0.86
USP3-208ENST00000558285 GRXCR1A8MXD5 290 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 IGFBP4P22692 258 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 EIF4BP23588 611 aaKnown RBP9.67□□□□□ -0.86
USP3-208ENST00000558285 RABGGTBP53611 331 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 GUCY1B3Q02153 619 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 MGAT3Q09327 533 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 HIC1Q14526 733 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 MXD4Q14582 209 aaPredicted RBP9.67□□□□□ -0.86
USP3-208ENST00000558285 MBTPS1Q14703 1052 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 CSPP1Q1MSJ5 1256 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 XKR9Q5GH70 373 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 LARP1BQ659C4 914 aaKnown RBP9.67□□□□□ -0.86
USP3-208ENST00000558285 MTERF4Q7Z6M4 381 aaKnown RBP9.67□□□□□ -0.86
USP3-208ENST00000558285 TPH2Q8IWU9 490 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 KIAA0319LQ8IZA0 1049 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 ABI1Q8IZP0 508 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 FIBCD1Q8N539 461 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 BANK1Q8NDB2 785 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 MAFAQ8NHW3 353 aaPredicted RBP9.67□□□□□ -0.86
USP3-208ENST00000558285 TNFRSF25Q93038 417 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 WNT8BQ93098 351 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 TOP1MTQ969P6 601 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 PPP2R3CQ969Q6 453 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 ARID3AQ99856 593 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms