RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 BUD13Q9BRD0 619 aaKnown RBP eCLIP16■□□□□ 0.153e-6■□□□□ 10.1
USP3-205ENST00000557884 CSRNP2Q9H175 543 aa16■□□□□ 0.15
USP3-205ENST00000557884 SRPRBQ9Y5M8 271 aaKnown RBP16■□□□□ 0.15
USP3-205ENST00000557884 STK24Q9Y6E0 443 aa16■□□□□ 0.15
USP3-205ENST00000557884 LAMA2P24043 3122 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 M0QZ92 97 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 SPTLC2O15270 562 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 RPLP2P05387 115 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 GHRP10912 638 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 NCLP19338 710 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 TMOD1P28289 359 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 LONP1P36776 959 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 UBA7P41226 1012 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 MKRN4PQ13434 485 aaPredicted RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 EMC2Q15006 297 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 SHHQ15465 462 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 KIZQ2M2Z5 673 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 FAM26DQ5JW98 314 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 IER5Q5VY09 327 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 PSRC1Q6PGN9 363 aaPredicted RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 RPUSD2Q8IZ73 545 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 NME8Q8N427 588 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 SLC7A3Q8WY07 619 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 TMEM143Q96AN5 459 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 CDK5RAP3Q96JB5 506 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 AK8Q96MA6 479 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 PNMA5Q96PV4 448 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 DHX33Q9H6R0 707 aaKnown RBP15.99■□□□□ 0.15
USP3-205ENST00000557884 TRPV2Q9Y5S1 764 aa15.99■□□□□ 0.15
USP3-205ENST00000557884 IGKV6-21A0A0C4DH24 114 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 ARHGEF35A5YM69 484 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 E9PMD0 336 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 USO1O60763 962 aaKnown RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 YEATS4O95619 227 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 DDIT3P35638 169 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 RFC5P40937 340 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 DNM2P50570 870 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 GRB10Q13322 594 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 TCTN1Q2MV58 587 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 USP49Q70CQ1 688 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 MAEAQ7L5Y9 396 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 OTOP2Q7RTS6 562 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 KCNK18Q7Z418 384 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 KRI1Q8N9T8 703 aaKnown RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 RASSF8Q8NHQ8 419 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 EPSTI1Q96J88 318 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 RNPC3Q96LT9 517 aaKnown RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 JPH2Q9BR39 696 aaPredicted RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 CELF4Q9BZC1 486 aaKnown RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 BHMT2Q9H2M3 363 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 CDHR5Q9HBB8 845 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 TSHZ2Q9NRE2 1034 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 SUCLA2Q9P2R7 463 aaPredicted RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 DBR1Q9UK59 544 aaKnown RBP15.98■□□□□ 0.15
USP3-205ENST00000557884 PPME1Q9Y570 386 aa15.98■□□□□ 0.15
USP3-205ENST00000557884 KDM3AQ9Y4C1 1321 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 TRIP12Q14669 1992 aaPredicted RBP15.97■□□□□ 0.15
USP3-205ENST00000557884 LAMA3Q16787 3333 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 PARNO95453 639 aaKnown RBP15.97■□□□□ 0.15
USP3-205ENST00000557884 FGBP02675 491 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 CXCL10P02778 98 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 XRCC6P12956 609 aaKnown RBP eCLIP15.97■□□□□ 0.15
USP3-205ENST00000557884 MUTP22033 750 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 NLRP11P59045 1033 aaKnown RBP15.97■□□□□ 0.15
USP3-205ENST00000557884 NUCB2P80303 420 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 LPIN1Q14693 890 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 KARSQ15046 597 aaKnown RBP15.97■□□□□ 0.15
USP3-205ENST00000557884 FBXO47Q5MNV8 452 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 TDHQ8IZJ6 230 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 SYMPKQ92797 1274 aaKnown RBP15.97■□□□□ 0.15
USP3-205ENST00000557884 SCLT1Q96NL6 688 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 OSMRQ99650 979 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 MTRQ99707 1265 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 ATP6V0A4Q9HBG4 840 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 XPNPEP1Q9NQW7 623 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 DNM3Q9UQ16 869 aa15.97■□□□□ 0.15
USP3-205ENST00000557884 ZBBXA8MT70 800 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 GPR32O75388 356 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 DGAT1O75907 488 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 SSBP05455 408 aaKnown RBP eCLIP15.96■□□□□ 0.15
USP3-205ENST00000557884 PFKMP08237 780 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 GPC3P51654 580 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 TMEM119Q4V9L6 283 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 HYIQ5T013 277 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 ATL3Q6DD88 541 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 PADI6Q6TGC4 694 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 RHPN2Q8IUC4 686 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 KSR1Q8IVT5 923 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 EXOC8Q8IYI6 725 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 DBF4BQ8NFT6 615 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 CALML4Q96GE6 196 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 AGO3Q9H9G7 860 aaKnown RBP15.96■□□□□ 0.15
USP3-205ENST00000557884 CXXC1Q9P0U4 656 aaPredicted RBP15.96■□□□□ 0.15
USP3-205ENST00000557884 CFAP45Q9UL16 551 aa15.96■□□□□ 0.15
USP3-205ENST00000557884 RBM19Q9Y4C8 960 aaKnown RBP15.96■□□□□ 0.15
USP3-205ENST00000557884 MORC2Q9Y6X9 1032 aaPredicted RBP15.96■□□□□ 0.15
USP3-205ENST00000557884 PPP6R2O75170 966 aa15.95■□□□□ 0.14
USP3-205ENST00000557884 EYA4O95677 639 aa15.95■□□□□ 0.14
USP3-205ENST00000557884 ACTN1P12814 892 aa15.95■□□□□ 0.14
USP3-205ENST00000557884 PLCG1P19174 1290 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms