RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 CEP85Q6P2H3 762 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 C15orf39Q6ZRI6 1047 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 PDZD3Q86UT5 571 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 MCF2L2Q86YR7 1114 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 ERC1Q8IUD2 1116 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 ADAM32Q8TC27 787 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 SLC22A17Q8WUG5 538 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 DDX23Q9BUQ8 820 aaKnown RBP15.34■□□□□ 0.05
TMEM260-215ENST00000557626 IL1RAPL2Q9NP60 686 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 IL17RBQ9NRM6 502 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 RXFP3Q9NSD7 469 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 GREB1Q4ZG55 1949 aa15.34■□□□□ 0.05
TMEM260-215ENST00000557626 DENND3A2RUS2 1198 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 SLC3A2P08195 630 aaKnown RBP15.33■□□□□ 0.04
TMEM260-215ENST00000557626 FGFR1P11362 822 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 PPFIA1Q13136 1202 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 BBXQ8WY36 941 aaPredicted RBP15.33■□□□□ 0.04
TMEM260-215ENST00000557626 MYADMQ96S97 322 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 FAM49AQ9H0Q0 323 aaPredicted RBP15.33■□□□□ 0.04
TMEM260-215ENST00000557626 ATP6V0A4Q9HBG4 840 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 TRPV2Q9Y5S1 764 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 IGSF9BQ9UPX0 1349 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 LAMA4Q16363 1823 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 MYH15Q9Y2K3 1946 aa15.33■□□□□ 0.04
TMEM260-215ENST00000557626 MYO18BQ8IUG5 2567 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 APPP05067 770 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 RPLP2P05387 115 aaKnown RBP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 HSPD1P10809 573 aaKnown RBP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 PRKCQQ04759 706 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 MLF2Q15773 248 aaPredicted RBP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 PPFIBP1Q86W92 1011 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 LRRC43Q8N309 656 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 C12orf50Q8NA57 414 aaPredicted RBP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 AUTS2Q8WXX7 1259 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 GPKOWQ92917 476 aaPredicted RBP eCLIP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 LSM14BQ9BX40 385 aaKnown RBP15.32■□□□□ 0.04
TMEM260-215ENST00000557626 BOLA2Q9H3K6 86 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 BCAS3Q9H6U6 928 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 LTB4R2Q9NPC1 389 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 C1orf112Q9NSG2 853 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 WASF3Q9UPY6 502 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 EXOC6BQ9Y2D4 811 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 CLUHO75153 1309 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 ABCB11O95342 1321 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 KALRNO60229 2985 aa15.32■□□□□ 0.04
TMEM260-215ENST00000557626 MGEA5O60502 916 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 TMEM62Q0P6H9 643 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 NFX1Q12986 1120 aaKnown RBP15.31■□□□□ 0.04
TMEM260-215ENST00000557626 GIT2Q14161 759 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 SIM2Q14190 667 aaPredicted RBP15.31■□□□□ 0.04
TMEM260-215ENST00000557626 GRIK4Q16099 956 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 TMEM266Q2M3C6 531 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 ZBTB41Q5SVQ8 909 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 STPG1Q5TH74 334 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 LRRC55Q6ZSA7 311 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 SLC24A5Q71RS6 500 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 VPS52Q8N1B4 723 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 SLC39A11Q8N1S5 342 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 ADAM2Q99965 735 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 TMEM117Q9H0C3 514 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 ZBP1Q9H171 429 aa15.31■□□□□ 0.04
TMEM260-215ENST00000557626 WDR6Q9NNW5 1121 aaKnown RBP15.31■□□□□ 0.04
TMEM260-215ENST00000557626 MBLAC1A4D2B0 266 aaPredicted RBP15.3■□□□□ 0.04
TMEM260-215ENST00000557626 ZNF252P-AS1Q0IIN9 211 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 HTR4Q13639 388 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 CCDC6Q16204 474 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 C19orf48Q6RUI8 117 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 METTL7BQ6UX53 244 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 KLHL5Q96PQ7 755 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 PDCD2LQ9BRP1 358 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 SCNM1Q9BWG6 230 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 RGS18Q9NS28 235 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 TMEM161AQ9NX61 479 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 IRAK3Q9Y616 596 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 NUMBLQ9Y6R0 609 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 HECTD1Q9ULT8 2610 aa15.3■□□□□ 0.04
TMEM260-215ENST00000557626 MYH6P13533 1939 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 C9IYK1 514 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 NCAM2O15394 837 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 IGHDP01880 384 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 IFIT2P09913 472 aaKnown RBP15.29■□□□□ 0.04
TMEM260-215ENST00000557626 TDGF1P13385 188 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 CD72P21854 359 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 RPS9P46781 194 aaKnown RBP15.29■□□□□ 0.04
TMEM260-215ENST00000557626 NOVA1P51513 510 aaKnown RBP15.29■□□□□ 0.04
TMEM260-215ENST00000557626 GPC5P78333 572 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 AAMPQ13685 434 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 PPP2R5DQ14738 602 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 SF3A2Q15428 464 aaKnown RBP15.29■□□□□ 0.04
TMEM260-215ENST00000557626 CYFIP1Q7L576 1253 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 CLDN23Q96B33 292 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 TMEM169Q96HH4 297 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 CASD1Q96PB1 797 aa15.29■□□□□ 0.04
TMEM260-215ENST00000557626 USP9XQ93008 2570 aaPredicted RBP15.28■□□□□ 0.04
TMEM260-215ENST00000557626 ANHXE9PGG2 379 aa15.28■□□□□ 0.04
TMEM260-215ENST00000557626 HOXA2O43364 376 aa15.28■□□□□ 0.04
TMEM260-215ENST00000557626 TOP3BO95985 862 aaKnown RBP15.28■□□□□ 0.04
TMEM260-215ENST00000557626 CFBP00751 764 aa15.28■□□□□ 0.04
TMEM260-215ENST00000557626 NEFLP07196 543 aa15.28■□□□□ 0.04
TMEM260-215ENST00000557626 PDHBP11177 359 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms