RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 PPME1Q9Y570 386 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 SLC15A5A6NIM6 579 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 K7ENM7 598 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 SLC16A3O15427 465 aaKnown RBP13.74□□□□□ -0.21
SHMT2-233ENST00000557529 PPP1R37O75864 691 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 OATP04181 439 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 NR2F2P24468 414 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 KCNJ6P48051 423 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 RTP1P59025 263 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 PPP2R3AQ06190 1150 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 TBC1D8BQ0IIM8 1120 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 GRB14Q14449 540 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 PTPN21Q16825 1174 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 MIIPQ5JXC2 388 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 CELF3Q5SZQ8 465 aaKnown RBP13.74□□□□□ -0.21
SHMT2-233ENST00000557529 FAM102BQ5T8I3 360 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 CCDC62Q6P9F0 684 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 HS2ST1Q7LGA3 356 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 DPP9Q86TI2 863 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 CNGA4Q8IV77 575 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 FBXO16Q8IX29 292 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-233ENST00000557529 CCDC102AQ96A19 550 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 EEF2KMTQ96G04 330 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 FAM167AQ96KS9 214 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 PANX2Q96RD6 677 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 NUP58Q9BVL2 599 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 STRA6Q9BX79 667 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 AZI2Q9H6S1 392 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 TMEM206Q9H813 350 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 ATP6V0A4Q9HBG4 840 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 CYP26B1Q9NR63 512 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 NRBP2Q9NSY0 501 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 FAM184BQ9ULE4 1060 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 TLL2Q9Y6L7 1015 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 ADGRA2Q96PE1 1338 aa13.74□□□□□ -0.21
SHMT2-233ENST00000557529 TMEM150BA6NC51 233 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 NOP56O00567 594 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 ARIH2O95376 493 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 NR3C1P04150 777 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 TXNP10599 105 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 ABCD1P33897 745 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 STAT5BP51692 787 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 SMTNP53814 917 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 SREBF2Q12772 1141 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 NOLC1Q14978 699 aaKnown RBP eCLIP13.73□□□□□ -0.211e-8■■■□□ 15.5
SHMT2-233ENST00000557529 TAF1CQ15572 869 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 LY6KQ17RY6 165 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 MAMDC4Q6UXC1 1216 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 MAEAQ7L5Y9 396 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 FRMD5Q7Z6J6 570 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 DHX37Q8IY37 1157 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 TC2NQ8N9U0 490 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 RETREG2Q8NC44 543 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 HVCN1Q96D96 273 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 ACCSQ96QU6 501 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 ERGIC2Q96RQ1 377 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 NIFKQ9BYG3 293 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 GBP3Q9H0R5 595 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 TMX1Q9H3N1 280 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 NDST4Q9H3R1 872 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 METTL14Q9HCE5 456 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 SPTLC3Q9NUV7 552 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 CGNQ9P2M7 1197 aaKnown RBP13.73□□□□□ -0.21
SHMT2-233ENST00000557529 TELO2Q9Y4R8 837 aa13.73□□□□□ -0.21
SHMT2-233ENST00000557529 H0YCG3 227 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 IGF2BP3O00425 579 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 MFAP3LO75121 409 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 LGR5O75473 907 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 EPB41P11171 864 aaKnown RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SCP2P22307 547 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 TCF7P36402 384 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 RFC5P40937 340 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 NCKAP1LP55160 1127 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SNRPFP62306 86 aaKnown RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 RBL2Q08999 1139 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 DMP1Q13316 513 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 MYBPC2Q14324 1141 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 ZC2HC1CQ53FD0 456 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 TRMT1LQ7Z2T5 733 aaKnown RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 IFNL1Q8IU54 200 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 TRIM59Q8IWR1 403 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SYCP3Q8IZU3 236 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 MSL3Q8N5Y2 521 aaKnown RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SMC1BQ8NDV3 1235 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SPIRE2Q8WWL2 714 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SPATA33Q96N06 139 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 GPR20Q99678 358 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 SH2D3AQ9BRG2 576 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 NAA15Q9BXJ9 866 aaKnown RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 GPBP1L1Q9HC44 474 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-233ENST00000557529 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 PLXNB2O15031 1838 aa13.72□□□□□ -0.21
SHMT2-233ENST00000557529 RBM47A0AV96 593 aaKnown RBP13.71□□□□□ -0.21
SHMT2-233ENST00000557529 TGFB1I1O43294 461 aa13.71□□□□□ -0.21
SHMT2-233ENST00000557529 STX10O60499 249 aa13.71□□□□□ -0.21
SHMT2-233ENST00000557529 GYPCP04921 128 aa13.71□□□□□ -0.21
SHMT2-233ENST00000557529 ATP4AP20648 1035 aa13.71□□□□□ -0.21
SHMT2-233ENST00000557529 SLC26A2P50443 739 aa13.71□□□□□ -0.21
SHMT2-233ENST00000557529 POLGP54098 1239 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-233ENST00000557529 ADKP55263 362 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms