RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 NIPA1Q7RTP0 329 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 TMC7Q7Z402 723 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 FAM228AQ86W67 206 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 CKAP2LQ8IYA6 745 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 CASD1Q96PB1 797 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 OSMRQ99650 979 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 APOL5Q9BWW9 433 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 LRRC2Q9BYS8 371 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 ANO3Q9BYT9 981 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 TMEM117Q9H0C3 514 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 NR2E1Q9Y466 385 aa14.4□□□□□ -0.1
SHMT2-223ENST00000556689 SMCO2A6NFE2 343 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 HIDE1A8MVS5 230 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 ZBTB42B2RXF5 422 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 SLC27A2O14975 620 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 HOXA2O43364 376 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 GPR32O75388 356 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 ATP4AP20648 1035 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 SREBF1P36956 1147 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 ADCY7P51828 1080 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 COL9A3Q14050 684 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-223ENST00000556689 DSC3Q14574 896 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 TPRNQ4KMQ1 711 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 TYW1BQ6NUM6 668 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 KCNT2Q6UVM3 1135 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 LRRC55Q6ZSA7 311 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 SGMS1Q86VZ5 419 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 MICU3Q86XE3 530 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 CCDC60Q8IWA6 550 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-223ENST00000556689 ABI1Q8IZP0 508 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 METTL13Q8N6R0 699 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 KREMEN2Q8NCW0 462 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 PPP1R16BQ96T49 567 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 GLT8D2Q9H1C3 349 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 TSHZ2Q9NRE2 1034 aa14.39□□□□□ -0.11
SHMT2-223ENST00000556689 V9GY48 417 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-223ENST00000556689 H0Y858 1186 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 VTNP04004 478 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 NEFLP07196 543 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 ZSCAN20P17040 1043 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 SP100P23497 879 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 PPM1AP35813 382 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 AP3B2Q13367 1082 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 CES5AQ6NT32 575 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 PPP1R18Q6NYC8 613 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 TRMT1LQ7Z2T5 733 aaKnown RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 PLA2G4DQ86XP0 818 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 UBALD2Q8IYN6 164 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 MRPL43Q8N983 215 aaKnown RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 BBXQ8WY36 941 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 CASP10Q92851 521 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 ZNF558Q96NG5 402 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 RBM28Q9NW13 759 aaKnown RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 SPG21Q9NZD8 308 aa14.38□□□□□ -0.11
SHMT2-223ENST00000556689 MAFBQ9Y5Q3 323 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-223ENST00000556689 IPO5O00410 1097 aaKnown RBP14.37□□□□□ -0.11
SHMT2-223ENST00000556689 DHX15O43143 795 aaKnown RBP14.37□□□□□ -0.11
SHMT2-223ENST00000556689 C22orf31O95567 290 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 PDGFBP01127 241 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-223ENST00000556689 CLK2P49760 499 aaKnown RBP14.37□□□□□ -0.11
SHMT2-223ENST00000556689 ITIH3Q06033 890 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 MTMR3Q13615 1198 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 CREB3L3Q68CJ9 461 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 NECTIN4Q96NY8 510 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 LSG1Q9H089 658 aaKnown RBP14.37□□□□□ -0.11
SHMT2-223ENST00000556689 ADAM7Q9H2U9 754 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 BARHL2Q9NY43 387 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 CEP131Q9UPN4 1083 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 SORCS3Q9UPU3 1222 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 CFAP54Q96N23 3096 aa14.37□□□□□ -0.11
SHMT2-223ENST00000556689 PLXNA4Q9HCM2 1894 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 FAM86B1E9PN63 330 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 hCG_1984214I3L0E3 225 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 MAGEB2O15479 319 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 GALR2O43603 387 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 FAM86B2P0C5J1 330 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 EIF4BP23588 611 aaKnown RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 TMOD1P28289 359 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 PBX3P40426 434 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 NLRP11P59045 1033 aaKnown RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 SMC1AQ14683 1233 aaKnown RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 BMS1Q14692 1282 aaKnown RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 NECTIN1Q15223 517 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 ZNF746Q6NUN9 644 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 APOA5Q6Q788 366 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 ECHDC2Q86YB7 292 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 ZNF710Q8N1W2 664 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 LRRC43Q8N309 656 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 ZNF713Q8N859 430 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-223ENST00000556689 ZNF577Q9BSK1 485 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 TBC1D22BQ9NU19 505 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 RNF19AQ9NV58 838 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 HCFC2Q9Y5Z7 792 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 CNTNAP5Q8WYK1 1306 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 KIAA1671Q9BY89 1806 aa14.36□□□□□ -0.11
SHMT2-223ENST00000556689 C2orf71A6NGG8 1288 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 PROB1E7EW31 1015 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 CXCL14O95715 111 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 PSAPP07602 524 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 CYP3A4P08684 503 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms