RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MTRQ99707 1265 aa15.62■□□□□ 0.09
VIPAS39-208ENST00000556412 HPSEQ9Y251 543 aa15.62■□□□□ 0.09
VIPAS39-208ENST00000556412 PCDHA2Q9Y5H9 948 aa15.62■□□□□ 0.09
VIPAS39-208ENST00000556412 MAFO75444 373 aaPredicted RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 KRT18P05783 430 aaKnown RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 CLTBP09497 229 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 TMOD1P28289 359 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 THPOP40225 353 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 UBE2HP62256 183 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 FAAP100Q0VG06 881 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 PTK7Q13308 1070 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 FAM102BQ5T8I3 360 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 TAF2Q6P1X5 1199 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 SV2BQ7L1I2 683 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 SERINC5Q86VE9 423 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 CEP57L1Q8IYX8 460 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 SYT2Q8N9I0 419 aaPredicted RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 DNAJB3Q8WWF6 145 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 STAMQ92783 540 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 WNT8BQ93098 351 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 TMEM143Q96AN5 459 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 CTAGE1Q96RT6 745 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 CEP89Q96ST8 783 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 JPH2Q9BR39 696 aaPredicted RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 PYM1Q9BRP8 204 aaKnown RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 RUSC1Q9BVN2 902 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 POLD4Q9HCU8 107 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 TMEM39AQ9NV64 488 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 SERTAD1Q9UHV2 236 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 AKT3Q9Y243 479 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 PPME1Q9Y570 386 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 EVI5O60447 810 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 CD4P01730 458 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 DNM2P50570 870 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 SLC12A3P55017 1021 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 TMEM62Q0P6H9 643 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 DRP2Q13474 957 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 E2F4Q16254 413 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 EXOC8Q8IYI6 725 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 MAP7D2Q96T17 732 aa15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 DHX33Q9H6R0 707 aaKnown RBP15.61■□□□□ 0.09
VIPAS39-208ENST00000556412 KIAA0100Q14667 2235 aaKnown RBP15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 NPHP3-ACAD11A0A0J9YXS1 232 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 CTSHP09668 335 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 CACNB1Q02641 598 aaPredicted RBP15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 RINT1Q6NUQ1 792 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 RSPH3Q86UC2 560 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 DHX38Q92620 1227 aaKnown RBP15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 ZNF668Q96K58 619 aaPredicted RBP15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 SCLT1Q96NL6 688 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 PPP1R12CQ9BZL4 782 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 GPRC5CQ9NQ84 441 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 XPNPEP1Q9NQW7 623 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 SUCLA2Q9P2R7 463 aaPredicted RBP15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 GINS2Q9Y248 185 aa15.6■□□□□ 0.09
VIPAS39-208ENST00000556412 SMIM35A0A1B0GVV1 85 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 ZNF202O95125 648 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 VTNP04004 478 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 LIG1P18858 919 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 CYP11B2P19099 503 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 AFMP43652 599 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 FAM160A1Q05DH4 1040 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 LONRF3Q496Y0 759 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 DYMQ7RTS9 669 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 SH3RF1Q7Z6J0 888 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 KIAA0319LQ8IZA0 1049 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 CCDC155Q8N6L0 562 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 CNNM3Q8NE01 707 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 MCPH1Q8NEM0 835 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 HIPK3Q9H422 1215 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 CUEDC2Q9H467 287 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 PCDH10Q9P2E7 1040 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 PRKAG2Q9UGJ0 569 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 IGKV6-21A0A0C4DH24 114 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 FAM237AA0A1B0GTK4 181 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 SLFN14P0C7P3 912 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 MKRN4PQ13434 485 aaPredicted RBP15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 C1orf186Q6ZWK4 172 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 RHPN2Q8IUC4 686 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 GRAMD1CQ8IYS0 662 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 TCP11Q8WWU5 503 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 POLR3FQ9H1D9 316 aaPredicted RBP15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 ZHX3Q9H4I2 956 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 PDLIM7Q9NR12 457 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 LMBRD1Q9NUN5 540 aa15.59■□□□□ 0.09
VIPAS39-208ENST00000556412 SCN10AQ9Y5Y9 1956 aa15.58■□□□□ 0.09
VIPAS39-208ENST00000556412 M0QZ92 97 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 ACTN4O43707 911 aaKnown RBP15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 GAS2O43903 313 aaKnown RBP15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 HIP1RO75146 1068 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 NR1I2O75469 434 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 BFSP2Q13515 415 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 ARSHQ5FYA8 562 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 FMR1NBQ8N0W7 255 aaPredicted RBP15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 PSPC1Q8WXF1 523 aaKnown RBP15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 NLRP4Q96MN2 994 aa15.58■□□□□ 0.08
VIPAS39-208ENST00000556412 CKBP12277 381 aa15.57■□□□□ 0.08
VIPAS39-208ENST00000556412 SYN1P17600 705 aa15.57■□□□□ 0.08
VIPAS39-208ENST00000556412 AMPD3Q01432 767 aa15.57■□□□□ 0.08
VIPAS39-208ENST00000556412 KIZQ2M2Z5 673 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms