RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 VTNP04004 478 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 ATP2B1P20020 1258 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 GJB2P29033 226 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 TXKP42681 527 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 TAP1Q03518 808 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 TMEM266Q2M3C6 531 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 ANO5Q75V66 913 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 SCLT1Q96NL6 688 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 YME1L1Q96TA2 773 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 OSBPL7Q9BZF2 842 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 PRDM12Q9H4Q4 367 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 SUGCTQ9HAC7 445 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 CYP26B1Q9NR63 512 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 TTC3P53804 2025 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 MAFO75444 373 aaPredicted RBP23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 STBD1O95210 358 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 LYPLA2O95372 231 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 OR52Z1P0C646 297 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 RFC5P40937 340 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 KIZQ2M2Z5 673 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 FAM117BQ6P1L5 589 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 LRRC71Q8N4P6 559 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 ERMNQ8TAM6 284 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 DYDC2Q96IM9 177 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 CCDC43Q96MW1 224 aaKnown RBP23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 SAMD11Q96NU1 681 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 OSMRQ99650 979 aa23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 TSPYL2Q9H2G4 693 aaPredicted RBP23.1■■□□□ 1.29
CCDC88C-210ENST00000555995 RALGAPA2Q2PPJ7 1873 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 IGKV6-21A0A0C4DH24 114 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 ENPP3O14638 875 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 GPR32O75388 356 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 STAG3L1P0CL83 205 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 YWHABP31946 246 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 NLRP11P59045 1033 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 NFX1Q12986 1120 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 MAFAQ8NHW3 353 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 SP7Q8TDD2 431 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 CEP170P1Q96L14 293 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 TGS1Q96RS0 853 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 EIF2AK1Q9BQI3 630 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 RAB34Q9BZG1 259 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 ERVK-5Q9HDB9 667 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 C1orf112Q9NSG2 853 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 STK24Q9Y6E0 443 aa23.09■■□□□ 1.29
CCDC88C-210ENST00000555995 LAD1O00515 517 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 WNT7AO00755 349 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 UPP2O95045 317 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 GPC3P51654 580 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 POLGP54098 1239 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 CYP4A11Q02928 519 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 MCTP1Q6DN14 999 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 TMCO2Q7Z6W1 182 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 ZNF410Q86VK4 478 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 NPAS4Q8IUM7 802 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 CEP89Q96ST8 783 aa23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 INO80BQ9C086 356 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 NOC2LQ9Y3T9 749 aaKnown RBP23.08■■□□□ 1.29
CCDC88C-210ENST00000555995 DENND3A2RUS2 1198 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 LINC01553A4QN01 128 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 GTPBP6O43824 516 aaPredicted RBP23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 EIF4BP23588 611 aaKnown RBP23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 ZNF174Q15697 407 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 RILPL1Q5EBL4 403 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 HAUS3Q68CZ6 603 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 PLA2G4FQ68DD2 849 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 TPH2Q8IWU9 490 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 TCP11Q8WWU5 503 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 NLRP7Q8WX94 980 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 HSD17B14Q9BPX1 270 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 TMEM60Q9H2L4 133 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 TUFT1Q9NNX1 390 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 ANKEF1Q9NU02 776 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 RGL1Q9NZL6 768 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 RWDD3Q9Y3V2 267 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 NLRC5Q86WI3 1866 aa23.07■■□□□ 1.28
CCDC88C-210ENST00000555995 LCHNA4D1U4 455 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 SLITRK3O94933 977 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 PDCP20941 246 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 ERVK-21P61565 698 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 CTTNQ14247 550 aaKnown RBP23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 XKR9Q5GH70 373 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 TMEM40Q8WWA1 233 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 ARNTL2Q8WYA1 636 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 PPP1R16BQ96T49 567 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 GCOM2Q9BZD3 368 aaPredicted RBP23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 ADAMTS10Q9H324 1103 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 DHX33Q9H6R0 707 aaKnown RBP23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 CDHR5Q9HBB8 845 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 ST3GAL5Q9UNP4 418 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 COL4A4P53420 1690 aaPredicted RBP23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 CHD9Q3L8U1 2897 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 ADGRA3Q8IWK6 1321 aa23.06■■□□□ 1.28
CCDC88C-210ENST00000555995 TMEM150BA6NC51 233 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 POTEMA6NI47 508 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 XRCC6P12956 609 aaKnown RBP eCLIP23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 MUTP22033 750 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 CUL4AQ13619 759 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 FAM228AQ86W67 206 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 SUCLA2Q9P2R7 463 aaPredicted RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms