RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 RFFLQ8WZ73 363 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 CACYBPQ9HB71 228 aaKnown RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 GPHNQ9NQX3 736 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 TBC1D23Q9NUY8 699 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 L1RE1Q9UN81 338 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 CEP170Q5SW79 1584 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 RPS8P62241 208 aaKnown RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 PROSER3Q2NL68 480 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 SPOPLQ6IQ16 392 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 GJB4Q9NTQ9 266 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 KDM6BO15054 1643 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 HNRNPDLO14979 420 aaKnown RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 ZNF185O15231 689 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 CACNB1Q02641 598 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 LLGL1Q15334 1064 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 BRDTQ58F21 947 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 ROPN1BQ9BZX4 212 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 PPCSQ9HAB8 311 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 ROPN1Q9HAT0 212 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 MLH3Q9UHC1 1453 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 MED7O43513 233 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 KDM1AO60341 852 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 PHKG2P15735 406 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 MARK3P27448 753 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 ELOA2Q8IYF1 753 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 LRRC47Q8N1G4 583 aaKnown RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 RNPC3Q96LT9 517 aaKnown RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 AMACRQ9UHK6 382 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 YEATS2Q9ULM3 1422 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 ARHGEF9O43307 516 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 DNAJC6O75061 913 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 KCNA4P22459 653 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 RFX1P22670 979 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 GYG1P46976 350 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 TMED8Q6PL24 325 aaPredicted RBP18.73■□□□□ 0.59
SYNE3-204ENST00000555759 DPP8Q6V1X1 898 aaPredicted RBP18.73■□□□□ 0.59
SYNE3-204ENST00000555759 ING2Q9H160 280 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 E7ENQ6 273 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 ECM2O94769 699 aaPredicted RBP18.73■□□□□ 0.59
SYNE3-204ENST00000555759 DYNLT1P63172 113 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 KIAA1755Q5JYT7 1200 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 NDUFA13Q9P0J0 144 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 CASP1P29466 404 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 NSMFQ6X4W1 530 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 LPXNO60711 386 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 KCNH2Q12809 1159 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 NOA1Q8NC60 698 aaKnown RBP18.73■□□□□ 0.59
SYNE3-204ENST00000555759 CAPN9O14815 690 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 ITIH4Q14624 930 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 TEKT4Q8WW24 435 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 KLC2Q9H0B6 622 aa18.73■□□□□ 0.59
SYNE3-204ENST00000555759 CDH16O75309 829 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 VHLP40337 213 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ATP11CQ8NB49 1132 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CABLES1Q8TDN4 633 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ISCUQ9H1K1 167 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ANKFY1Q9P2R3 1169 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 KRT14P02533 472 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 SRGNP10124 158 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 MAGEA13PA6NCF6 341 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ESRRBO95718 433 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CTCFP49711 727 aaPredicted RBP18.72■□□□□ 0.59
SYNE3-204ENST00000555759 SEC24CP53992 1094 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 THAP11Q96EK4 314 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CHP1Q99653 195 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CDCA7Q9BWT1 371 aaPredicted RBP18.72■□□□□ 0.59
SYNE3-204ENST00000555759 NBPF3Q9H094 633 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ATP6V0A4Q9HBG4 840 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CNOT8Q9UFF9 292 aaKnown RBP18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ANAPC7Q9UJX3 599 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CASP2P42575 452 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 KPNB1Q14974 876 aaKnown RBP18.72■□□□□ 0.59
SYNE3-204ENST00000555759 RABGAP1LQ5R372 815 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ENAHQ8N8S7 591 aaPredicted RBP18.72■□□□□ 0.59
SYNE3-204ENST00000555759 CALN1Q9BXU9 219 aa18.72■□□□□ 0.59
SYNE3-204ENST00000555759 ATP10AO60312 1499 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 TOM1O60784 492 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 COPS2P61201 443 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 NOP14P78316 857 aaKnown RBP18.71■□□□□ 0.59
SYNE3-204ENST00000555759 LCORLQ8N3X6 602 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 MYCBPAPQ8TBZ2 947 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 GREM2Q9H772 168 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 DLGAP2Q9P1A6 1054 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 ZBED1O96006 694 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 CHRNDQ07001 517 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 HIC2Q96JB3 615 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 BTBD6Q96KE9 485 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 G3BP2Q9UN86 482 aaKnown RBP18.71■□□□□ 0.59
SYNE3-204ENST00000555759 CDHR2Q9BYE9 1310 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 TAF12Q16514 161 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 TRIM59Q8IWR1 403 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 PALMDQ9NP74 551 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 SCHIP1Q9P0W5 487 aaPredicted RBP18.71■□□□□ 0.59
SYNE3-204ENST00000555759 MAGI3Q5TCQ9 1506 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 IGF2BP3O00425 579 aaKnown RBP eCLIP18.71■□□□□ 0.59
SYNE3-204ENST00000555759 DNAAF3Q8N9W5 541 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 RNF169Q8NCN4 708 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 PRPF31Q8WWY3 499 aaKnown RBP18.71■□□□□ 0.59
SYNE3-204ENST00000555759 CCDC17Q96LX7 622 aa18.71■□□□□ 0.59
SYNE3-204ENST00000555759 FXR1P51114 621 aaKnown RBP eCLIP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms