RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ARHGEF15O94989 841 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 GJB5O95377 273 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 OR52Z1P0C646 297 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 TOB1P50616 345 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-219ENST00000555563 PAK2Q13177 524 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 DRP2Q13474 957 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 CTTNQ14247 550 aaKnown RBP15.38■□□□□ 0.05
SHMT2-219ENST00000555563 KIZQ2M2Z5 673 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 TMEM266Q2M3C6 531 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 MCTP1Q6DN14 999 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 USP38Q8NB14 1042 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 MYLIPQ8WY64 445 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 OSMRQ99650 979 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 EIF2AK1Q9BQI3 630 aaKnown RBP15.38■□□□□ 0.05
SHMT2-219ENST00000555563 ZBED2Q9BTP6 218 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 SUGCTQ9HAC7 445 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 AKT3Q9Y243 479 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 LCHNA4D1U4 455 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 H3BQV1 296 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 GPR32O75388 356 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 TMOD1P28289 359 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 YWHABP31946 246 aaKnown RBP15.37■□□□□ 0.05
SHMT2-219ENST00000555563 NPEPPSP55786 919 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 C4orf19Q8IY42 314 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 LINC01599Q8WXQ3 324 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 ZSWIM4Q9H7M6 989 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 CYP26B1Q9NR63 512 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 PADI3Q9ULW8 664 aa15.37■□□□□ 0.05
SHMT2-219ENST00000555563 NOC2LQ9Y3T9 749 aaKnown RBP15.37■□□□□ 0.05
SHMT2-219ENST00000555563 COL4A4P53420 1690 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-219ENST00000555563 COL4A6Q14031 1691 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 IGKV6-21A0A0C4DH24 114 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 SLITRK3O94933 977 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 CRYBB1P53674 252 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-219ENST00000555563 SPRED2Q7Z698 418 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 TPH2Q8IWU9 490 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 ZNF579Q8NAF0 562 aaKnown RBP15.36■□□□□ 0.05
SHMT2-219ENST00000555563 NEK9Q8TD19 979 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 ZNF668Q96K58 619 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-219ENST00000555563 CEP170P1Q96L14 293 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 HSD17B14Q9BPX1 270 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 ADAMTS10Q9H324 1103 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 PRDM12Q9H4Q4 367 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 ERVK-5Q9HDB9 667 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 PCDHB6Q9Y5E3 794 aa15.36■□□□□ 0.05
SHMT2-219ENST00000555563 ZBTB39O15060 712 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 TECP42680 631 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 GPC3P51654 580 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 NLRP11P59045 1033 aaKnown RBP15.35■□□□□ 0.05
SHMT2-219ENST00000555563 TAP1Q03518 808 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 NFX1Q12986 1120 aaKnown RBP15.35■□□□□ 0.05
SHMT2-219ENST00000555563 LARP1BQ659C4 914 aaKnown RBP15.35■□□□□ 0.05
SHMT2-219ENST00000555563 FAM228AQ86W67 206 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 C4orf32Q8N8J7 132 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 TOP1MTQ969P6 601 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 RAD9AQ99638 391 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 TMX1Q9H3N1 280 aa15.35■□□□□ 0.05
SHMT2-219ENST00000555563 BMP2KQ9NSY1 1161 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-219ENST00000555563 K7ELQ4 463 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 ENPP3O14638 875 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 MAFO75444 373 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 RPS6KA5O75582 802 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 UPP2O95045 317 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 LYPLA2O95372 231 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 FOSL2P15408 326 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 POLGP54098 1239 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 HTRA4P83105 476 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 SLC7A3Q8WY07 619 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 SCLT1Q96NL6 688 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 JPH2Q9BR39 696 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 FTHL17Q9BXU8 183 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 TSPYL2Q9H2G4 693 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 DHX33Q9H6R0 707 aaKnown RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.34■□□□□ 0.05
SHMT2-219ENST00000555563 ST3GAL5Q9UNP4 418 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 PPME1Q9Y570 386 aa15.34■□□□□ 0.05
SHMT2-219ENST00000555563 LINC01553A4QN01 128 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 EPOPA6NHQ4 379 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 MGEA5O60502 916 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 MED24O75448 989 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 SPATA31C1P0DKV0 1188 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 DARSP14868 501 aaKnown RBP15.33■□□□□ 0.04
SHMT2-219ENST00000555563 RFC5P40937 340 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 PTGDRQ13258 359 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 EMC2Q15006 297 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 RILPL1Q5EBL4 403 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 XKR9Q5GH70 373 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 OTUD6AQ7L8S5 288 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 RTN4RL1Q86UN2 441 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-219ENST00000555563 ZNF710Q8N1W2 664 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 SP7Q8TDD2 431 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-219ENST00000555563 NLRP7Q8WX94 980 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 YME1L1Q96TA2 773 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 CERS4Q9HA82 394 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 TUFT1Q9NNX1 390 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 SUCLA2Q9P2R7 463 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-219ENST00000555563 INSL6Q9Y581 213 aa15.33■□□□□ 0.04
SHMT2-219ENST00000555563 EYSQ5T1H1 3165 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 CDH23Q9H251 3354 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 VPS37CA5D8V6 355 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms