RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TMX1Q9H3N1 280 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 SUGCTQ9HAC7 445 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 C1orf112Q9NSG2 853 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 RWDD3Q9Y3V2 267 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 LOXHD1Q8IVV2 1947 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 FAM205CA6NFA0 338 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 C5orf67F2Z3F1 127 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 DTNBO60941 627 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 RPS6KA5O75582 802 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 DGKIO75912 1065 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 BAG4O95429 457 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 P4HBP07237 508 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 LINC00271P0C7V0 271 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 CLCN3P51790 818 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 EPHA7Q15375 998 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 SAFBQ15424 915 aaKnown RBP eCLIP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 KIZQ2M2Z5 673 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 C4orf19Q8IY42 314 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 ATXN2LQ8WWM7 1075 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 JPH2Q9BR39 696 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 FOXP1Q9H334 677 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 CERS4Q9HA82 394 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 CDHR5Q9HBB8 845 aa18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 NOC2LQ9Y3T9 749 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-209ENST00000554872 PRRC2BQ5JSZ5 2229 aaKnown RBP18.02■□□□□ 0.47
CCDC88C-209ENST00000554872 RBAK-RBAKDNI3L0D1 243 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 RFXAPO00287 272 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 UPP2O95045 317 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 VTNP04004 478 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 STAG3L1P0CL83 205 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 EIF4BP23588 611 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 SARSP49591 514 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 GPC3P51654 580 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 ANO5Q75V66 913 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 FAM228AQ86W67 206 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 EXOC8Q8IYI6 725 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 CMTR2Q8IYT2 770 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 FBXO22Q8NEZ5 403 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 FBXO18Q8NFZ0 1043 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 NEK9Q8TD19 979 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 C17orf80Q9BSJ5 609 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 UPF2Q9HAU5 1272 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 RGS18Q9NS28 235 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 THEGQ9P2T0 379 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 SEPT9Q9UHD8 586 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 ST3GAL5Q9UNP4 418 aa18.01■□□□□ 0.47
CCDC88C-209ENST00000554872 XIRP2A4UGR9 3374 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 H3BNC9 293 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 ST18O60284 1047 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 NEMFO60524 1076 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 MAFO75444 373 aaPredicted RBP18■□□□□ 0.47
CCDC88C-209ENST00000554872 RB1P06400 928 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 DSC3Q14574 896 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 EPC2Q52LR7 807 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 LRRC71Q8N4P6 559 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 FIBCD1Q8N539 461 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 BANK1Q8NDB2 785 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 GDPD5Q8WTR4 605 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 C8orf76Q96K31 380 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 MTMR9Q96QG7 549 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 OSMRQ99650 979 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 AKT3Q9Y243 479 aa18■□□□□ 0.47
CCDC88C-209ENST00000554872 NLRC5Q86WI3 1866 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 C9IYK1 514 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 GAS2O43903 313 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 LYPLA2O95372 231 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 DARSP14868 501 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 NLRP11P59045 1033 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 FAM189BP81408 668 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 CALCRLQ16602 461 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 TMEM266Q2M3C6 531 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 SLC24A5Q71RS6 500 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 TRMT1LQ7Z2T5 733 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 ZNF410Q86VK4 478 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 TMEM192Q8IY95 271 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 LXNQ9BS40 222 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 ELAC1Q9H777 363 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 ZSWIM4Q9H7M6 989 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 CYP26B1Q9NR63 512 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 PCDHA12Q9UN75 941 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 GINS2Q9Y248 185 aa17.99■□□□□ 0.47
CCDC88C-209ENST00000554872 SPTBN5Q9NRC6 3674 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 MARCH6O60337 910 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 MGEA5O60502 916 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 RFC5P40937 340 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 TRAPPC10P48553 1259 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 DNM2P50570 870 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 NFX1Q12986 1120 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 MTERF2Q49AM1 385 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 MRPL38Q96DV4 380 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 TBC1D32Q96NH3 1257 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 ADAM2Q99965 735 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 HSD17B14Q9BPX1 270 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 PLVAPQ9BX97 442 aa17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 DHX33Q9H6R0 707 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 WRAP73Q9P2S5 460 aaPredicted RBP17.98■□□□□ 0.47
CCDC88C-209ENST00000554872 DDX11L8A8MPP1 907 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 WNT7AO00755 349 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 MCM2P49736 904 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 PTPROQ16827 1216 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms