RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PCDHA12Q9UN75 941 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 NOC2LQ9Y3T9 749 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TMEM265A0A087WTH1 108 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 POTEMA6NI47 508 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 ENPP3O14638 875 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 MGEA5O60502 916 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 CSDE1O75534 798 aaKnown RBP13□□□□□ -0.33
CCDC88C-208ENST00000554165 GJB5O95377 273 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 MCM2P49736 904 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 TAP1Q03518 808 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 TBC1D8BQ0IIM8 1120 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 GNL2Q13823 731 aaKnown RBP13□□□□□ -0.33
CCDC88C-208ENST00000554165 ADGRE1Q14246 886 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 MCTP1Q6DN14 999 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 TPH2Q8IWU9 490 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 NME8Q8N427 588 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 C4orf32Q8N8J7 132 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 OSMRQ99650 979 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 EIF2AK1Q9BQI3 630 aaKnown RBP13□□□□□ -0.33
CCDC88C-208ENST00000554165 LXNQ9BS40 222 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 BMP2KQ9NSY1 1161 aaPredicted RBP13□□□□□ -0.33
CCDC88C-208ENST00000554165 FOXD4L1Q9NU39 408 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 PADI3Q9ULW8 664 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 SMC3Q9UQE7 1217 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 AKT3Q9Y243 479 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 STXBP5LQ9Y2K9 1186 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 PCDHB6Q9Y5E3 794 aa13□□□□□ -0.33
CCDC88C-208ENST00000554165 KDM3AQ9Y4C1 1321 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 M0QZ92 97 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 MAGEB2O15479 319 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 SLITRK3O94933 977 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 AMHP03971 560 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 P4HBP07237 508 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 IBSPP21815 317 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 FGFR4P22455 802 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 NLRP11P59045 1033 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 CUL4AQ13619 759 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 HSD17B14Q9BPX1 270 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 ADAMTS10Q9H324 1103 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 ERVK-5Q9HDB9 667 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 CEP131Q9UPN4 1083 aa12.99□□□□□ -0.33
CCDC88C-208ENST00000554165 IGKV6-21A0A0C4DH24 114 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 EFCAB14O75071 495 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 TECP42680 631 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 NFX1Q12986 1120 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 PAK2Q13177 524 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 FAM228AQ86W67 206 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 KSR1Q8IVT5 923 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 ARNTL2Q8WYA1 636 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 APBB2Q92870 758 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 TOP1MTQ969P6 601 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 CEP170P1Q96L14 293 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 RAD9AQ99638 391 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 CYP26B1Q9NR63 512 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 MTUS1Q9ULD2 1270 aa12.98□□□□□ -0.33
CCDC88C-208ENST00000554165 LINC01553A4QN01 128 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 H3BQV1 296 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 OR52Z1P0C646 297 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 SPATA31C1P0DKV0 1188 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 FOSL2P15408 326 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 YWHABP31946 246 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 GPC3P51654 580 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 CRYBB1P53674 252 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 IL17AQ16552 155 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 LARP1BQ659C4 914 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 C4orf19Q8IY42 314 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 PIGOQ8TEQ8 1089 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 TMEM143Q96AN5 459 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 MAP7D2Q96T17 732 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 ZSWIM4Q9H7M6 989 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 ST3GAL5Q9UNP4 418 aa12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 PRRC2BQ5JSZ5 2229 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-208ENST00000554165 TTC3P53804 2025 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 MAFO75444 373 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 MED24O75448 989 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 RPS6KA5O75582 802 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 RPLP2P05387 115 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 TMOD1P28289 359 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 GATMP50440 423 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 HTRA4P83105 476 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 PTGDRQ13258 359 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 ECM1Q16610 540 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 XKR9Q5GH70 373 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 USP38Q8NB14 1042 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 IL27Q8NEV9 243 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 C17orf80Q9BSJ5 609 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 TSPYL2Q9H2G4 693 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 SUCLA2Q9P2R7 463 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 NOL7Q9UMY1 257 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 SQORQ9Y6N5 450 aa12.96□□□□□ -0.33
CCDC88C-208ENST00000554165 TRANK1O15050 2925 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 PRUNE2Q8WUY3 3088 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 EYSQ5T1H1 3165 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 A0A087WZ62 844 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 PP2D1A8MPX8 630 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 DARSP14868 501 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 IGFBP4P22692 258 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 TRAPPC10P48553 1259 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 POTEGQ6S5H5 508 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms