RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	TBK1	Q9UHD2	729 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	FAF1	Q9UNN5	650 aa	Predicted RBP	12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	PFAS	O15067	1338 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	GLI2	P10070	1586 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	ESRRA	P11474	423 aa	Predicted RBP	12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	ANXA13	P27216	316 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	KCNH2	Q12809	1159 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	KCNB1	Q14721	858 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	PADI6	Q6TGC4	694 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	SPDL1	Q96EA4	605 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	PDLIM2	Q96JY6	352 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM4	Q9C037	500 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	ASNSD1	Q9NWL6	643 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	ANAPC7	Q9UJX3	599 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	LRFN2	Q9ULH4	789 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	MAP3K7	O43318	606 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	PAM	P19021	973 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM28	Q13263	835 aa	Known RBP	12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	KLHL38	Q2WGJ6	581 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	CCDC124	Q96CT7	223 aa	Known RBP	12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	ZNF341	Q9BYN7	854 aa		12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	SRP68	Q9UHB9	627 aa	Known RBP	12.37	□□□□□ -0.43
SYNE2-208	ENST00000553289	UBN2	Q6ZU65	1347 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	USP42	Q9H9J4	1324 aa	Known RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	GOLGA8IP	A6NC78	632 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	GOLGA8J	A6NMD2	632 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	RAD17	O75943	681 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	KRT38	O76015	456 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	GGPS1	O95749	300 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CHEK2	O96017	543 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	STXBP2	Q15833	593 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TAF1B	Q53T94	588 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	PPWD1	Q96BP3	646 aa	Known RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	COL15A1	P39059	1388 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	PNPLA6	Q8IY17	1366 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	FAM187A	A6NFU0	413 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	POTEM	A6NI47	508 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	SLC26A4	O43511	780 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CIITA	P33076	1130 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	USP11	P51784	963 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	DEUP1	Q05D60	604 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	FAM133B	Q5BKY9	247 aa	Known RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CRLF3	Q8IUI8	442 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CFAP36	Q96G28	342 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CD209	Q9NNX6	404 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	SCOC	Q9UIL1	159 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CPD	O75976	1380 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	USP31	Q70CQ4	1352 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	NFKBIA	P25963	317 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	ART3	Q13508	389 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIP13	Q15645	432 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM72	Q6ZMU5	477 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TTLL6	Q8N841	843 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CYP26B1	Q9NR63	512 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TOPORS	Q9NS56	1045 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	GINM1	Q9NU53	330 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	HOXC10	Q9NYD6	342 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	NRK	Q7Z2Y5	1582 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	P4HB	P07237	508 aa	Known RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TAC1	P20366	129 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CHRNA3	P32297	505 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	ATP2C1	P98194	919 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	MAPK6	Q16659	721 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	FAM83B	Q5T0W9	1011 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	WDR75	Q8IWA0	830 aa	Known RBP	12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM55	Q9BYV6	548 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	C2orf40	Q9H1Z8	148 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CLTCL1	P53675	1640 aa		12.36	□□□□□ -0.43
SYNE2-208	ENST00000553289	CLDN3	O15551	220 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	GUCY2C	P25092	1073 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	PRDX5	P30044	214 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	KCNJ6	P48051	423 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	ADCY1	Q08828	1119 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	FAF2	Q96CS3	445 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM15	Q9C019	465 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	SLITRK6	Q9H5Y7	841 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	ADGRG1	Q9Y653	693 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRIM49B	A6NDI0	452 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	NUGGC	Q68CJ6	796 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	PITPNM3	Q9BZ71	974 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	SUGT1	Q9Y2Z0	365 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	GNGT2	O14610	69 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	SMIM24	O75264	130 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	SRGAP2C	P0DJJ0	459 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	CYP2D6	P10635	497 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	AP3M2	P53677	418 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	NBPF9	Q3BBW0	867 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	DALRD3	Q5D0E6	543 aa	Known RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	HIBCH	Q6NVY1	386 aa	Predicted RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	RNF168	Q8IYW5	571 aa	Predicted RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	SAYSD1	Q9NPB0	183 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	UNC13B	O14795	1591 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	OVOS2	A0A0G2JMS6	1433 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	OVOS2	A0A0J9YW53	1432 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	OVOS2	Q6IE36	1432 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	ACSL3	O95573	720 aa		12.35	□□□□□ -0.43

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