RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 R4GN57 208 aa14.79□□□□□ -0.04
VPS29-211ENST00000553128 ZBTB42B2RXF5 422 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 NT5C1B-RDH14C9J2C7 533 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 CA8P35219 290 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 KRT17Q04695 432 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 ITGB3BPQ13352 177 aaPredicted RBP14.78□□□□□ -0.04
VPS29-211ENST00000553128 WTAPQ15007 396 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 CLLU1OSQ5K130 101 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 PLEKHM2Q8IWE5 1019 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 SIX5Q8N196 739 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 CMTR1Q8N1G2 835 aaKnown RBP14.78□□□□□ -0.04
VPS29-211ENST00000553128 SLC39A11Q8N1S5 342 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 RRP36Q96EU6 259 aaKnown RBP14.78□□□□□ -0.04
VPS29-211ENST00000553128 CNTNAP3BQ96NU0 1288 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 SPZ1Q9BXG8 430 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 CNTNAP3Q9BZ76 1288 aa14.78□□□□□ -0.04
VPS29-211ENST00000553128 ELAC1Q9H777 363 aaKnown RBP14.78□□□□□ -0.04
VPS29-211ENST00000553128 CACNA1BQ00975 2339 aa14.77□□□□□ -0.04
VPS29-211ENST00000553128 KMT2BQ9UMN6 2715 aaPredicted RBP14.77□□□□□ -0.04
VPS29-211ENST00000553128 EPG5Q9HCE0 2579 aa14.77□□□□□ -0.04
VPS29-211ENST00000553128 hCG_1642624A0A1W2PR95 340 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 GPR182O15218 404 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 NARSO43776 548 aaKnown RBP14.77□□□□□ -0.05
VPS29-211ENST00000553128 GPR32O75388 356 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 PLEKHA8P1O95397 391 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 CXCL14O95715 111 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 LMNAP02545 664 aaKnown RBP14.77□□□□□ -0.05
VPS29-211ENST00000553128 VTNP04004 478 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 PPM1AP35813 382 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 ANTXR2P58335 489 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 TMC5Q6UXY8 1006 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 TMEM173Q86WV6 379 aaPredicted RBP14.77□□□□□ -0.05
VPS29-211ENST00000553128 LRRC43Q8N309 656 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 PSTPIP2Q9H939 334 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 CYP26B1Q9NR63 512 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 PCDHA6Q9UN73 950 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 USTQ9Y2C2 406 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 PCDHA8Q9Y5H6 950 aa14.77□□□□□ -0.05
VPS29-211ENST00000553128 MAFGO15525 162 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 ATG7O95352 703 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 CCNE2O96020 404 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 CYP21A2P08686 494 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 METAP2P50579 478 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS29-211ENST00000553128 HDAC1Q13547 482 aaPredicted RBP14.76□□□□□ -0.05
VPS29-211ENST00000553128 TDGQ13569 410 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 ATAT1Q5SQI0 421 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 B4GALNT3Q6L9W6 998 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 CATIPQ7Z7H3 387 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 PLCD3Q8N3E9 789 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 DCLK2Q8N568 766 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 SRBD1Q8N5C6 995 aaKnown RBP14.76□□□□□ -0.05
VPS29-211ENST00000553128 RIN2Q8WYP3 895 aaPredicted RBP14.76□□□□□ -0.05
VPS29-211ENST00000553128 TNPO1Q92973 898 aaKnown RBP14.76□□□□□ -0.05
VPS29-211ENST00000553128 MXRA8Q9BRK3 442 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 RNF216Q9NWF9 866 aaPredicted RBP14.76□□□□□ -0.05
VPS29-211ENST00000553128 DUSP12Q9UNI6 340 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 DENND4AQ7Z401 1863 aa14.76□□□□□ -0.05
VPS29-211ENST00000553128 IGKV6D-21A0A0A0MT36 114 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.75□□□□□ -0.05
VPS29-211ENST00000553128 ERICH2A1L162 156 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 ATP4AP20648 1035 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 CRYBB1P53674 252 aaPredicted RBP14.75□□□□□ -0.05
VPS29-211ENST00000553128 TRDNQ13061 729 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 ECHDC2Q86YB7 292 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 CCDC60Q8IWA6 550 aaPredicted RBP14.75□□□□□ -0.05
VPS29-211ENST00000553128 RNF169Q8NCN4 708 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 IGDCC4Q8TDY8 1250 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 SLC22A17Q8WUG5 538 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 PGBD1Q96JS3 809 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 RTP3Q9BQQ7 232 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 ZBP1Q9H171 429 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 KCNK12Q9HB15 430 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 FBXL21Q9UKT6 434 aa14.75□□□□□ -0.05
VPS29-211ENST00000553128 NFASCO94856 1347 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 KRBA1A5PL33 1030 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 SPDYE3A6NKU9 549 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 DDX39AO00148 427 aaKnown RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 HBP1O60381 514 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 N4BP1O75113 896 aaKnown RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 C22orf31O95567 290 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 BCAR1P56945 870 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 PTH1RQ03431 593 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 ABHD15Q6UXT9 468 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 ABI1Q8IZP0 508 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 VPS52Q8N1B4 723 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 HELQQ8TDG4 1101 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 BCL7CQ8WUZ0 217 aaPredicted RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 RSAD2Q8WXG1 361 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 ZNF668Q96K58 619 aaPredicted RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 SDF4Q9BRK5 362 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 OSBPL3Q9H4L5 887 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 AGO4Q9HCK5 861 aaKnown RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 DZANK1Q9NVP4 752 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 SEC63Q9UGP8 760 aaKnown RBP14.74□□□□□ -0.05
VPS29-211ENST00000553128 CFAP47Q6ZTR5 3102 aa14.74□□□□□ -0.05
VPS29-211ENST00000553128 E7EWF7 191 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 BACH1O14867 736 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 HOXA2O43364 376 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 CFHP08603 1231 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 RXRAP19793 462 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms