RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 LOC102724159A0A0B4J2E5 919 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 C9IYK1 514 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 FZD9O00144 591 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 KCNH1O95259 989 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 ASLP04424 464 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 SNRPB2P08579 225 aaKnown RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 ZGLP1P0C6A0 271 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 JMJD7P0C870 316 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 NAT1P18440 290 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 ETV3P41162 512 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 TMPRSS15P98073 1019 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 NOGQ13253 232 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 PPP2R5DQ14738 602 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 PWP2Q15269 919 aaKnown RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 CFAP100Q494V2 611 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 RNF219Q5W0B1 726 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 TMPRSS7Q7RTY8 843 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 BRAPQ7Z569 592 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 SPATS2Q86XZ4 545 aaKnown RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 AFAP1L2Q8N4X5 818 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 PPP1R13LQ8WUF5 828 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 CCDC120Q96HB5 630 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 CLUHP3Q96NS8 147 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 KLHL25Q9H0H3 589 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 ASCC2Q9H1I8 757 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 SP110Q9HB58 689 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 APEX2Q9UBZ4 518 aa4.78□□□□□ -1.64
LIMA1-208ENST00000551691 AFDNP55196 1824 aaKnown RBP4.78□□□□□ -1.64
LIMA1-208ENST00000551691 CGNL1Q0VF96 1302 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 EVC2Q86UK5 1308 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 MYOCOSA0A1B0GUC4 107 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 SHTN1A0MZ66 631 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GOLGA6CA6NDK9 693 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GOLGA6BA6NDN3 693 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 TSPAN6O43657 245 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 UBOX5O94941 541 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 NPTXRO95502 500 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GOLGA6DP0CG33 693 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 MED14OSP0DP75 135 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 PYGMP11217 842 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 SDSP20132 328 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 CD247P20963 164 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 SCNN1BP51168 640 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 NEK2P51955 445 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GAB4Q2WGN9 574 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 RGMBQ6NW40 437 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 Q7L0L9 218 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 MTDHQ86UE4 582 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 PASD1Q8IV76 773 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 SIRT2Q8IXJ6 389 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 C7orf61Q8IZ16 206 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 CHPFQ8IZ52 775 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GPC2Q8N158 579 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 MYO1HQ8N1T3 1032 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 DTWD2Q8NBA8 298 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 PIWIL2Q8TC59 973 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 BTN2A2Q8WVV5 523 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 DDX1Q92499 740 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 PTPRN2Q92932 1015 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 TSR2Q969E8 191 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 NOL6Q9H6R4 1146 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 SAGE1Q9NXZ1 904 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 GOLGA6AQ9NYA3 693 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 EBF1Q9UH73 591 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 TNPO3Q9Y5L0 923 aaKnown RBP4.77□□□□□ -1.65
LIMA1-208ENST00000551691 PRUNE2Q8WUY3 3088 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 TRPM7Q96QT4 1865 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 KDRP35968 1356 aa4.77□□□□□ -1.65
LIMA1-208ENST00000551691 E2F8A0AVK6 867 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SHISA3A0PJX4 238 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 WTIPA6NIX2 430 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 AQP7O14520 342 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 CBFA2T2O43439 604 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 GAS7O60861 476 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 EIF3JO75822 258 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SCGB1D2O95969 90 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 PHKG2P15735 406 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 BMP7P18075 431 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 HOXA5P20719 270 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 GLDCP23378 1020 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 CCND1P24385 295 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 PDE6BP35913 854 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 ECI1P42126 302 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 CTSWP56202 376 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 IL2P60568 153 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 AUHQ13825 339 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 DHCR24Q15392 516 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 PKN2Q16513 984 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 TBC1D9BQ66K14 1250 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 IQSEC1Q6DN90 963 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 PKN3Q6P5Z2 889 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 FBXO46Q6PJ61 603 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SLC4A10Q6U841 1118 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 USP53Q70EK8 1073 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 USP50Q70EL3 339 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 MAMDC2Q7Z304 686 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 DDX53Q86TM3 631 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 C11orf74Q86VG3 221 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 DNAJC10Q8IXB1 793 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 HHIPL1Q96JK4 782 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms