RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TBC1D17Q9HA65 648 aa16.61■□□□□ 0.25
VPS29-209ENST00000551655 C1orf112Q9NSG2 853 aa16.61■□□□□ 0.25
VPS29-209ENST00000551655 TMEM161AQ9NX61 479 aa16.61■□□□□ 0.25
VPS29-209ENST00000551655 SPG21Q9NZD8 308 aa16.61■□□□□ 0.25
VPS29-209ENST00000551655 SALL3Q9BXA9 1300 aa16.61■□□□□ 0.25
VPS29-209ENST00000551655 COL4A3Q01955 1670 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 PALM3A6NDB9 673 aaPredicted RBP16.6■□□□□ 0.25
VPS29-209ENST00000551655 ZNF213O14771 459 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 CYTH3O43739 400 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 CXCL14O95715 111 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 CCDC178Q5BJE1 867 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 NLRX1Q86UT6 975 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 SLC39A11Q8N1S5 342 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 ACSF2Q96CM8 615 aaPredicted RBP16.6■□□□□ 0.25
VPS29-209ENST00000551655 TMEM117Q9H0C3 514 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 CACNA1IQ9P0X4 2223 aa16.6■□□□□ 0.25
VPS29-209ENST00000551655 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 N4BP1O75113 896 aaKnown RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 ITGB5P18084 799 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 PPM1AP35813 382 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 METAP2P50579 478 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS29-209ENST00000551655 COL9A2Q14055 689 aaPredicted RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 IFIT1BQ5T764 474 aaKnown RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 ZC3H14Q6PJT7 736 aaKnown RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 MTHFD1LQ6UB35 978 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 CCDC149Q6ZUS6 474 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 FAM228AQ86W67 206 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 LRRC43Q8N309 656 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 GIMAP8Q8ND71 665 aaPredicted RBP16.59■□□□□ 0.25
VPS29-209ENST00000551655 SLC22A17Q8WUG5 538 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 DZANK1Q9NVP4 752 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 DLGAP2Q9P1A6 1054 aa16.59■□□□□ 0.25
VPS29-209ENST00000551655 ATRXP46100 2492 aa16.58■□□□□ 0.25
VPS29-209ENST00000551655 SMIM35A0A1B0GVV1 85 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 LRRN2O75325 713 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 RPLP2P05387 115 aaKnown RBP16.58■□□□□ 0.24
VPS29-209ENST00000551655 FAM189BP81408 668 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 TBC1D8BQ0IIM8 1120 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 OTOP3Q7RTS5 596 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 TMEM173Q86WV6 379 aaPredicted RBP16.58■□□□□ 0.24
VPS29-209ENST00000551655 SMARCC2Q8TAQ2 1214 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 OSMRQ99650 979 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 RIOX1Q9H6W3 641 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 NCDNQ9UBB6 729 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 EVPLQ92817 2033 aa16.58■□□□□ 0.24
VPS29-209ENST00000551655 GLULP15104 373 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 DSC3Q14574 896 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 SEC23AQ15436 765 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 CLLU1OSQ5K130 101 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 KIAA0319Q5VV43 1072 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 GPR149Q86SP6 731 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 CABP7Q86V35 215 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 C1orf210Q8IVY1 113 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 MAML2Q8IZL2 1156 aaPredicted RBP16.57■□□□□ 0.24
VPS29-209ENST00000551655 RNF169Q8NCN4 708 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 ST13P5Q8NFI4 369 aaPredicted RBP16.57■□□□□ 0.24
VPS29-209ENST00000551655 GPRASP2Q96D09 838 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 UBAC1Q9BSL1 405 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 ZBP1Q9H171 429 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 WNT16Q9UBV4 365 aa16.57■□□□□ 0.24
VPS29-209ENST00000551655 PNMA6FA0A0J9YX94 578 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 MEIS2O14770 477 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 KLRC1P26715 233 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 KIZQ2M2Z5 673 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 VARS2Q5ST30 1063 aaKnown RBP16.56■□□□□ 0.24
VPS29-209ENST00000551655 KIAA0319LQ8IZA0 1049 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 VPS52Q8N1B4 723 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 NME8Q8N427 588 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 GPR152Q8TDT2 470 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 CHAMP1Q96JM3 812 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 FOXQ1Q9C009 403 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 ELAC1Q9H777 363 aaKnown RBP16.56■□□□□ 0.24
VPS29-209ENST00000551655 SENP2Q9HC62 589 aa16.56■□□□□ 0.24
VPS29-209ENST00000551655 GPR182O15218 404 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 KINO60870 393 aaKnown RBP16.55■□□□□ 0.24
VPS29-209ENST00000551655 ADRB1P08588 477 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 MTMR1Q13613 665 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 GRM4Q14833 912 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 CYB5R4Q7L1T6 521 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 ABI1Q8IZP0 508 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 TMEM87AQ8NBN3 555 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 BCL7CQ8WUZ0 217 aaPredicted RBP16.55■□□□□ 0.24
VPS29-209ENST00000551655 AZI2Q9H6S1 392 aa16.55■□□□□ 0.24
VPS29-209ENST00000551655 CDV3Q9UKY7 258 aaKnown RBP16.55■□□□□ 0.24
VPS29-209ENST00000551655 SPDYE4A6NLX3 237 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 BCAR1P56945 870 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 LETM2Q2VYF4 491 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 SLC44A3Q8N4M1 653 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 HELQQ8TDG4 1101 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 SFXN1Q9H9B4 322 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 JPH1Q9HDC5 661 aaPredicted RBP16.54■□□□□ 0.24
VPS29-209ENST00000551655 IGSF9Q9P2J2 1179 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 SIT1Q9Y3P8 196 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 UBIAD1Q9Y5Z9 338 aa16.54■□□□□ 0.24
VPS29-209ENST00000551655 VTNP04004 478 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 MYBP10242 640 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 HOXB3P14651 431 aaPredicted RBP16.53■□□□□ 0.24
VPS29-209ENST00000551655 GBP2P32456 591 aaPredicted RBP16.53■□□□□ 0.24
VPS29-209ENST00000551655 STAT5BP51692 787 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 ACTR2P61160 394 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms