RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	CNKSR3	Q6P9H4	555 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	POTEG	Q6S5H5	508 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	KCNK18	Q7Z418	384 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	CATSPER3	Q86XQ3	398 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	HSCB	Q8IWL3	235 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	C4orf19	Q8IY42	314 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	RPUSD2	Q8IZ73	545 aa	Known RBP	12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	METTL13	Q8N6R0	699 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	FAM167A	Q96KS9	214 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	FAM161B	Q96MY7	647 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	PBX4	Q9BYU1	374 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	CELF4	Q9BZC1	486 aa	Known RBP	12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	TMX1	Q9H3N1	280 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	SUGCT	Q9HAC7	445 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	XPNPEP1	Q9NQW7	623 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	NOL7	Q9UMY1	257 aa	Known RBP	12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	NOC2L	Q9Y3T9	749 aa	Known RBP	12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	TRPV2	Q9Y5S1	764 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	CLIC4	Q9Y696	253 aa		12.57	□□□□□ -0.4
RAB5B-208	ENST00000550283	ARID2	Q68CP9	1835 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	LCHN	A4D1U4	455 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	CAND2	O75155	1236 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	FGFR4	P22455	802 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	YWHAB	P31946	246 aa	Known RBP	12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	FXR2	P51116	673 aa	Known RBP eCLIP	12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	IGSF22	Q8N9C0	903 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	OSMR	Q99650	979 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	POLD4	Q9HCU8	107 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	CYP26B1	Q9NR63	512 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	NRBP2	Q9NSY0	501 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	GINS2	Q9Y248	185 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	KIF3A	Q9Y496	699 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	COL4A6	Q14031	1691 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	LOXHD1	Q8IVV2	1947 aa		12.56	□□□□□ -0.4
RAB5B-208	ENST00000550283	STX6	O43752	255 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	MAF	O75444	373 aa	Predicted RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	LYPLA2	O95372	231 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	PFKM	P08237	780 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	ATP2A2	P16615	1042 aa	Known RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	DNAJB2	P25686	324 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	NLRP11	P59045	1033 aa	Known RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	SMAD3	P84022	425 aa	Known RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	TBC1D8B	Q0IIM8	1120 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	ORC2	Q13416	577 aa	Predicted RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	PTPA	Q15257	358 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	RILPL1	Q5EBL4	403 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	FAM117B	Q6P1L5	589 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	FAM228A	Q86W67	206 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	TMEM143	Q96AN5	459 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	CEP170P1	Q96L14	293 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	IFIH1	Q9BYX4	1025 aa	Known RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	NKX2-4	Q9H2Z4	354 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	DHX33	Q9H6R0	707 aa	Known RBP	12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	ZSWIM4	Q9H7M6	989 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	PADI3	Q9ULW8	664 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	ZDHHC9	Q9Y397	364 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	SLC4A7	Q9Y6M7	1214 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	KDM3A	Q9Y4C1	1321 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	EYS	Q5T1H1	3165 aa		12.55	□□□□□ -0.4
RAB5B-208	ENST00000550283	MICAL3	Q7RTP6	2002 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	RARRES1	P49788	294 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	GPC3	P51654	580 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	CEBPZ	Q03701	1054 aa	Known RBP	12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	SF3A1	Q15459	793 aa	Known RBP	12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	XKR9	Q5GH70	373 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	TSHZ1	Q6ZSZ6	1077 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	USP49	Q70CQ1	688 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	HERC6	Q8IVU3	1022 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	PNMA5	Q96PV4	448 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	USP28	Q96RU2	1077 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	ERVK-5	Q9HDB9	667 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	GPRC5C	Q9NQ84	441 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283	AKT3	Q9Y243	479 aa		12.54	□□□□□ -0.4
RAB5B-208	ENST00000550283		A0A087WZ62	844 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	VWA3A	A6NCI4	1184 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	EPOP	A6NHQ4	379 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	ENPP3	O14638	875 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	MAGEB2	O15479	319 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	EMC2	Q15006	297 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	BRAP	Q7Z569	592 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	RSPH3	Q86UC2	560 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	ASAP3	Q8TDY4	903 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	GUCD1	Q96NT3	240 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	PLIN2	Q99541	437 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	POLR3C	Q9BUI4	534 aa	Predicted RBP	12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	MINDY3	Q9H8M7	445 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	LRWD1	Q9UFC0	647 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	CEP131	Q9UPN4	1083 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	REV3L	O60673	3130 aa		12.53	□□□□□ -0.4
RAB5B-208	ENST00000550283	ABHD14A-ACY1	A0A1B0GW23	586 aa		12.52	□□□□□ -0.41
RAB5B-208	ENST00000550283		E9PMD0	336 aa		12.52	□□□□□ -0.41
RAB5B-208	ENST00000550283	USO1	O60763	962 aa	Known RBP	12.52	□□□□□ -0.41
RAB5B-208	ENST00000550283	BAIAP3	O94812	1187 aa		12.52	□□□□□ -0.41
RAB5B-208	ENST00000550283	PARN	O95453	639 aa	Known RBP	12.52	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms