RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NIFKQ9BYG3 293 aaKnown RBP12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 TMX1Q9H3N1 280 aa12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 ELAC1Q9H777 363 aaKnown RBP12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 DDX25Q9UHL0 483 aaKnown RBP12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 PLAGL2Q9UPG8 496 aa12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 NOC2LQ9Y3T9 749 aaKnown RBP12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 STK36Q9NRP7 1315 aa12.26□□□□□ -0.45
VTI1BP3-201ENST00000550220 TBX3O15119 743 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 EDIL3O43854 480 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 GPR32O75388 356 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 MMP1P03956 469 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 LINC00271P0C7V0 271 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 EIF4BP23588 611 aaKnown RBP12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 FAM189BP81408 668 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 PRKCEQ02156 737 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 SCRN1Q12765 414 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 COL19A1Q14993 1142 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 TMEM266Q2M3C6 531 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 TCEAL5Q5H9L2 206 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 PPP4R3AQ6IN85 833 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 TRMT1LQ7Z2T5 733 aaKnown RBP12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 NEK9Q8TD19 979 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 RSPH1Q8WYR4 309 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 OSMRQ99650 979 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 PHF20Q9BVI0 1012 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 UNC45AQ9H3U1 944 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 ATP6V0A4Q9HBG4 840 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 BRMS1Q9HCU9 246 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 AKT3Q9Y243 479 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 PPME1Q9Y570 386 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 PCDHB12Q9Y5F1 795 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 DOCK5Q9H7D0 1870 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 TTC3P53804 2025 aa12.25□□□□□ -0.45
VTI1BP3-201ENST00000550220 TRANK1O15050 2925 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 FSD2A1L4K1 749 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 C9IYK1 514 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 GRM6O15303 877 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 CHMP2AO43633 222 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 ZNF862O60290 1169 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 VTNP04004 478 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 NLRP11P59045 1033 aaKnown RBP12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 PSMC5P62195 406 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 UBE3AQ05086 875 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 B3GNT9Q6UX72 402 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 NEK8Q86SG6 692 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 LINC01465Q8N7H1 131 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 TMEM40Q8WWA1 233 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 LARP6Q9BRS8 491 aaKnown RBP12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 INO80BQ9C086 356 aaPredicted RBP12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 ADAMTS10Q9H324 1103 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 CDHR5Q9HBB8 845 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 CHST12Q9NRB3 414 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 TMEM161AQ9NX61 479 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 DACT1Q9NYF0 836 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 TPCN1Q9ULQ1 816 aa12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 MRPL42Q9Y6G3 142 aaKnown RBP12.24□□□□□ -0.45
VTI1BP3-201ENST00000550220 GRXCR2A6NFK2 248 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 MARCH6O60337 910 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 TDP2O95551 362 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 CLCN3P51790 818 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 TARBP2Q15633 366 aaKnown RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 NPY5RQ15761 445 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 INF2Q27J81 1249 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 LETM2Q2VYF4 491 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 PTCRAQ6ISU1 281 aaPredicted RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 PDE12Q6L8Q7 609 aaKnown RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 FAM228AQ86W67 206 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 SLFN12Q8IYM2 578 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 KLHL23Q8NBE8 558 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 ETNPPLQ8TBG4 499 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 SPPL3Q8TCT6 385 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 SCLT1Q96NL6 688 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 NECAB3Q96P71 396 aaPredicted RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 GCOM2Q9BZD3 368 aaPredicted RBP12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 PRKAG3Q9UGI9 489 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 PTPRSQ13332 1948 aa12.23□□□□□ -0.45
VTI1BP3-201ENST00000550220 CARNS1A5YM72 827 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 TBKBP1A7MCY6 615 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 DDX11L8A8MPP1 907 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 BAG4O95429 457 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 EOMESO95936 686 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 SKIP12755 728 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 DARSP14868 501 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 QARSP47897 775 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 GPC3P51654 580 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 PPP2R5CQ13362 524 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 DSC3Q14574 896 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 CTC1Q2NKJ3 1217 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 PAN2Q504Q3 1202 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 SPOUT1Q5T280 376 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 EP400NLQ6ZTU2 488 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 ZNF410Q86VK4 478 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 FAM178BQ8IXR5 827 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 ABI1Q8IZP0 508 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 NLRP7Q8WX94 980 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 AIFM3Q96NN9 605 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 TMEM117Q9H0C3 514 aa12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 ALG13Q9NP73 1137 aaKnown RBP12.22□□□□□ -0.45
VTI1BP3-201ENST00000550220 KCNMB3Q9NPA1 279 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms