RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NFRKBQ6P4R8 1299 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 KCNN1Q92952 543 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 LENG1Q96BZ8 264 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 DNAJC19Q96DA6 116 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 CEP89Q96ST8 783 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 CRISPLD2Q9H0B8 497 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 RNF208Q9H0X6 261 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 UNC93B1Q9H1C4 597 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 PDLIM7Q9NR12 457 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 OLFML3Q9NRN5 406 aa17.78■□□□□ 0.44
PRPF40A-212ENST00000545856 EVPLQ92817 2033 aa17.77■□□□□ 0.44
PRPF40A-212ENST00000545856 H0YCG3 227 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 RHOBTB3O94955 611 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 ASGR1P07306 291 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 MYL3P08590 195 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PPFIA1Q13136 1202 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PNOCQ13519 176 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PPP2R5AQ15172 486 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 COBLL1Q53SF7 1204 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 GLT1D1Q96MS3 346 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PARVGQ9HBI0 331 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 LARSQ9P2J5 1176 aaKnown RBP17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PHF24Q9UPV7 400 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 PCDHA5Q9Y5H7 936 aa17.77■□□□□ 0.43
PRPF40A-212ENST00000545856 KIAA0100Q14667 2235 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 KIF20AO95235 890 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 RPN1P04843 607 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 TMOD1P28289 359 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 ACLYP53396 1101 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 BEX3Q00994 111 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 EHHADHQ08426 723 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 CUL4BQ13620 913 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 ALCAMQ13740 583 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 GIT2Q14161 759 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 EMC2Q15006 297 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 KCNA10Q16322 511 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 CAMK4Q16566 473 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 ZSCAN23Q3MJ62 389 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 MTERF2Q49AM1 385 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 ARSHQ5FYA8 562 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 SASS6Q6UVJ0 657 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 REEP2Q9BRK0 252 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 RUSC1Q9BVN2 902 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 RNPEPQ9H4A4 650 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 DACH1Q9UI36 760 aa17.76■□□□□ 0.43
PRPF40A-212ENST00000545856 MBLAC1A4D2B0 266 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 ZBTB42B2RXF5 422 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 ASAP2O43150 1006 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 CCDC192P0DO97 292 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 INSRRP14616 1297 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 MARK3P27448 753 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 DNM2P50570 870 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 NPEPPSP55786 919 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 MXD4Q14582 209 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 GRIK4Q16099 956 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 IER5Q5VY09 327 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 PLA2G4FQ68DD2 849 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 STXBP4Q6ZWJ1 553 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 C7orf31Q8N865 590 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 EXOC1Q9NV70 894 aa17.75■□□□□ 0.43
PRPF40A-212ENST00000545856 MYADML2A6NDP7 307 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 ZBTB39O15060 712 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 KLRC4O43908 158 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 USO1O60763 962 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 FAM13AO94988 1023 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 SGPL1O95470 568 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 C22orf31O95567 290 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 SMIM10L2AP0DMW4 78 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 SMIM10L2BP0DMW5 78 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 ZNF445P59923 1031 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 DHX8Q14562 1220 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 TAF2Q6P1X5 1199 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 SPIRE2Q8WWL2 714 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 DEFB118Q96PH6 123 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 ST6GALNAC4Q9H4F1 302 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 ANO10Q9NW15 660 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 UBE4BO95155 1302 aa17.74■□□□□ 0.43
PRPF40A-212ENST00000545856 TRIP12Q14669 1992 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 SIP14410 1827 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 C17orf102A2RUQ5 167 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 PRR29P0C7W0 189 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 PTGS1P23219 599 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 GJA8P48165 433 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 SMTNP53814 917 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 ADAM17P78536 824 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 POU5F1BQ06416 359 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 MORC3Q14149 939 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 MTFR1Q15390 333 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 STX1AQ16623 288 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 ZNF658Q5TYW1 1059 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 FOXR2Q6PJQ5 311 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 CXCL17Q6UXB2 119 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 FAM43BQ6ZT52 329 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 MLKLQ8NB16 471 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 HVCN1Q96D96 273 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 IFT74Q96LB3 600 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 NTPCRQ9BSD7 190 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 PANK4Q9NVE7 773 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 GTF2IRD1Q9UHL9 959 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 PCDHA2Q9Y5H9 948 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms