RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 RHOBTB3O94955 611 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 QPCTQ16769 361 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 UNC13DQ70J99 1090 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 SMIM5Q71RC9 77 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 LRRC47Q8N1G4 583 aaKnown RBP15.32■□□□□ 0.04
LIMS1-215ENST00000544547 SH3GL2Q99962 352 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 CFAP69A5D8W1 941 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 LMNB1P20700 586 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 COPS2P61201 443 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 ZNF844Q08AG5 666 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 ZYXQ15942 572 aaKnown RBP15.32■□□□□ 0.04
LIMS1-215ENST00000544547 KLHDC7AQ5VTJ3 777 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 GLYCTKQ8IVS8 523 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 SLC44A5Q8NCS7 719 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 RNF217Q8TC41 542 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 KIFAP3Q92845 792 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 VTI1AQ96AJ9 217 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 COA7Q96BR5 231 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 RBM17Q96I25 401 aaKnown RBP15.32■□□□□ 0.04
LIMS1-215ENST00000544547 FAF1Q9UNN5 650 aaPredicted RBP15.32■□□□□ 0.04
LIMS1-215ENST00000544547 KDM6AO15550 1401 aaPredicted RBP15.32■□□□□ 0.04
LIMS1-215ENST00000544547 TMEM120BA0PK00 339 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 LAD1O00515 517 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 TRAPPC3O43617 180 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 CNGA1P29973 690 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 ERVK-9P63128 1117 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 PPM1KQ8N3J5 372 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 CEP70Q8NHQ1 597 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 TSNARE1Q96NA8 513 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 KDM4CQ9H3R0 1056 aa15.32■□□□□ 0.04
LIMS1-215ENST00000544547 SHOX2O60902 331 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 HARSP12081 509 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 ATF7P17544 494 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 GSCP56915 257 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 NSMFQ6X4W1 530 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 METTL13Q8N6R0 699 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 DDX25Q9UHL0 483 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 ZNF148Q9UQR1 794 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 I3L4J1 428 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 ORC4O43929 436 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 LAMB3Q13751 1172 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 PFKFB3Q16875 520 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 YTHDF3Q7Z739 585 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 TTC16Q8NEE8 873 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 SUPT20HQ8NEM7 779 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 ZFP69BQ9UJL9 534 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 SSU72P8A0A1W2PR75 194 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 UBTFL6P0CB48 400 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 CYP19A1P11511 503 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 PRLRP16471 622 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 CDR2Q01850 454 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 SEPT6Q14141 434 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 NAB2Q15742 525 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 C10orf76Q5T2E6 689 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 EPM2AIP1Q7L775 607 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 ITGA4P13612 1032 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 KCNA3P22001 575 aa15.31■□□□□ 0.04
LIMS1-215ENST00000544547 HSPA9P38646 679 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 EPS8L3Q8TE67 593 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 TYW1Q9NV66 732 aaKnown RBP15.31■□□□□ 0.04
LIMS1-215ENST00000544547 TARSP26639 723 aaKnown RBP15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ALDH5A1P51649 535 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ITGB3BPQ13352 177 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-215ENST00000544547 LRRC36Q1X8D7 754 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 KIAA1755Q5JYT7 1200 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ERGIC2Q96RQ1 377 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 DNM1LO00429 736 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 FAM98CQ17RN3 349 aaKnown RBP15.3■□□□□ 0.04
LIMS1-215ENST00000544547 TTI2Q6NXR4 508 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 CCDC137Q6PK04 289 aaKnown RBP15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ZNF354CQ86Y25 554 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 TPH2Q8IWU9 490 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ATP8A2Q9NTI2 1148 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 ABCF3Q9NUQ8 709 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 KCNJ1P48048 391 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 KCNJ2P63252 427 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 PRR16Q569H4 304 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 PIGSQ96S52 555 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 STK17AQ9UEE5 414 aa15.3■□□□□ 0.04
LIMS1-215ENST00000544547 TRPA1O75762 1119 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 DCTN3O75935 186 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 AGTP01019 485 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 MRPS35P82673 323 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 ZNF746Q6NUN9 644 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 GPR101Q96P66 508 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 NAP1L4Q99733 375 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 ALG13Q9NP73 1137 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 LMTK3Q96Q04 1460 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 SFI1A8K8P3 1242 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 SMIM22K7EJ46 135 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PPFIA2O75334 1257 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PPM1FP49593 454 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PSEN1P49768 467 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 TBC1D10BQ4KMP7 808 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 EAPPQ56P03 285 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 BRINP3Q76B58 766 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PALM2Q8IXS6 379 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 CEP120Q8N960 986 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PIP4K2CQ8TBX8 421 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 FAM129AQ9BZQ8 928 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms