RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NCAPGQ9BPX3 1015 aa14.94□□□□□ -0.02
VPS33A-208ENST00000543633 REEP2Q9BRK0 252 aa14.94□□□□□ -0.02
VPS33A-208ENST00000543633 AMFRQ9UKV5 643 aa14.94□□□□□ -0.02
VPS33A-208ENST00000543633 UTP11Q9Y3A2 253 aaKnown RBP14.94□□□□□ -0.02
VPS33A-208ENST00000543633 GOLGA6L7A0A1B0GV03 622 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 FAM187AA6NFU0 413 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 TMCO5BA8MYB1 307 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 DDX3XO00571 662 aaKnown RBP eCLIP14.93□□□□□ -0.026e-17■■■□□ 18.4
VPS33A-208ENST00000543633 PPP1R12BO60237 982 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 PPFIA2O75334 1257 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CCDC172P0C7W6 258 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 HOXD13P35453 343 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 RNASE9P60153 205 aaKnown RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 POU5F1Q01860 360 aaKnown RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 ENOX2Q16206 610 aaKnown RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 TTBK2Q6IQ55 1244 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CROCCP2Q86T23 111 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CATSPER3Q86XQ3 398 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 FLAD1Q8NFF5 587 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 SLC30A5Q8TAD4 765 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 POLR3CQ9BUI4 534 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 DDX47Q9H0S4 455 aaKnown RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CARD9Q9H257 536 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 GCNT4Q9P109 453 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 LOXHD1Q8IVV2 1947 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 NRXN2Q9P2S2 1712 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 F8VZ95 297 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 AKAP3O75969 853 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 HLA-DOAP06340 250 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 RFX1P22670 979 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 GBP1P32455 592 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 PTENP60484 403 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 ARHGAP4P98171 946 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CACNB1Q02641 598 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-208ENST00000543633 QRICH1Q2TAL8 776 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 CCDC121Q6ZUS5 278 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 HOOK3Q86VS8 718 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 BORCS6Q96GS4 357 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 TXLNGYQ9BZA5 131 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 NEUROG2Q9H2A3 272 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 KANSL2Q9H9L4 492 aa14.93□□□□□ -0.02
VPS33A-208ENST00000543633 TBCAO75347 108 aaKnown RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 EYA4O95677 639 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SPATA31C1P0DKV0 1188 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 HSPA6P17066 643 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 HPDP32754 393 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 CIITAP33076 1130 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 MMP14P50281 582 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SEC24CP53992 1094 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 HADHBP55084 474 aaKnown RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 DHX34Q14147 1143 aaKnown RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 DAAM2Q86T65 1068 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 NLGN1Q8N2Q7 840 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 TBC1D16Q8TBP0 767 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 UBLCP1Q8WVY7 318 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 GJA10Q969M2 543 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 MKL1Q969V6 931 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 TLCD1Q96CP7 247 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 AP1M1Q9BXS5 423 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 ZHX3Q9H4I2 956 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SIPA1L1O43166 1804 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 GOLGA6L10A0A0M3HER8 536 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 DAPK3O43293 454 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 NUDT17P0C025 328 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 HOXA10P31260 410 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SOX5P35711 763 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SREBF1P36956 1147 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 MNAT1P51948 309 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 DRG2P55039 364 aaKnown RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 EIF6P56537 245 aaKnown RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 LACTB2Q53H82 288 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 DCAF17Q5H9S7 520 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-208ENST00000543633 CCDC13Q8IYE1 715 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 OLIG1Q8TAK6 271 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 VTI1AQ96AJ9 217 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 PSMD1Q99460 953 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 SYT11Q9BT88 431 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 STK33Q9BYT3 514 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 NYAP2Q9P242 653 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 PCDHA1Q9Y5I3 950 aa14.92□□□□□ -0.02
VPS33A-208ENST00000543633 FRMPD4Q14CM0 1322 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 RASSF9O75901 435 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 STAT3P40763 770 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 GALCP54803 685 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 IRX3P78415 501 aaPredicted RBP14.91□□□□□ -0.02
VPS33A-208ENST00000543633 PPATQ06203 517 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 PICALMQ13492 652 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 TCEAL1Q15170 157 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 RNF187Q5TA31 235 aaPredicted RBP14.91□□□□□ -0.02
VPS33A-208ENST00000543633 SLC51AQ86UW1 340 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 CCDC50Q8IVM0 306 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 U2AF1L4Q8WU68 220 aaKnown RBP14.91□□□□□ -0.02
VPS33A-208ENST00000543633 TATDN2Q93075 761 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 FMO2Q99518 471 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 COA1Q9GZY4 146 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 DDX4Q9NQI0 724 aaKnown RBP14.91□□□□□ -0.02
VPS33A-208ENST00000543633 SEL1LQ9UBV2 794 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 AMACRQ9UHK6 382 aa14.91□□□□□ -0.02
VPS33A-208ENST00000543633 KLRG2A4D1S0 409 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms