RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 KLHDC7AQ5VTJ3 777 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 GJB7Q6PEY0 223 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 SYCP3Q8IZU3 236 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 TRIM58Q8NG06 486 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 PDCD2LQ9BRP1 358 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 ARFGAP3Q9NP61 516 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 PXMP2Q9NR77 195 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 FAM53CQ9NYF3 392 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 AIPL1Q9NZN9 384 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 GCNT4Q9P109 453 aa17.89■□□□□ 0.45
COL4A1-204ENST00000543140 PARP14Q460N5 1801 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 PSMC2P35998 433 aaKnown RBP17.88■□□□□ 0.45
COL4A1-204ENST00000543140 QARSP47897 775 aaKnown RBP17.88■□□□□ 0.45
COL4A1-204ENST00000543140 HS2ST1Q7LGA3 356 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 RDH13Q8NBN7 331 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 NEK9Q8TD19 979 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 BORCS6Q96GS4 357 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 PSMB7Q99436 277 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 GBP3Q9H0R5 595 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 ST7Q9NRC1 585 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 AGPAT3Q9NRZ7 376 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 CD2APQ9Y5K6 639 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 LOXHD1Q8IVV2 1947 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 LTBP3Q9NS15 1303 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 SNRNP48Q6IEG0 339 aaKnown RBP17.88■□□□□ 0.45
COL4A1-204ENST00000543140 GBP6Q6ZN66 633 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 STXBP4Q6ZWJ1 553 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 CAGE1Q8TC20 777 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 AJAP1Q9UKB5 411 aaPredicted RBP17.88■□□□□ 0.45
COL4A1-204ENST00000543140 JRKLQ9Y4A0 524 aa17.88■□□□□ 0.45
COL4A1-204ENST00000543140 ANO9A1A5B4 782 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 K7ENM7 598 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 SASH3O75995 380 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 RARRES1P49788 294 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 AS3MTQ9HBK9 375 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 PLCB1Q9NQ66 1216 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 TBC1D22BQ9NU19 505 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 POLR2AP24928 1970 aaKnown RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 TISP43B9A030 160 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 RBAK-RBAKDNI3L0D1 243 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 PDE2AO00408 941 aaPredicted RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 TBC1D8O95759 1140 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 YWHABP31946 246 aaKnown RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 PTK2Q05397 1052 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 SLC18A3Q16572 532 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 MSANTD4Q8NCY6 345 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 RBM46Q8TBY0 533 aaKnown RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 CCDC43Q96MW1 224 aaKnown RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 SIX2Q9NPC8 291 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 MAP3K20Q9NYL2 800 aaKnown RBP17.87■□□□□ 0.45
COL4A1-204ENST00000543140 GGA3Q9NZ52 723 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 TCEAL9Q9UHQ7 104 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 ZNF112Q9UJU3 913 aa17.87■□□□□ 0.45
COL4A1-204ENST00000543140 PJA2O43164 708 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 NCK2O43639 380 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 PPP1R12BO60237 982 aaPredicted RBP17.86■□□□□ 0.45
COL4A1-204ENST00000543140 CCNE2O96020 404 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 TRIM49P0CI25 452 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 TRIM49CP0CI26 452 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 CXCR5P32302 372 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 IRF2BP2Q7Z5L9 587 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 SGIP1Q9BQI5 828 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 PACSIN1Q9BY11 444 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 FRMD4BQ9Y2L6 1034 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 CCDC151A5D8V7 595 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 DNAAF5Q86Y56 855 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 ZBTB9Q96C00 473 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 ALS2CR12Q96Q35 445 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 GPRC5CQ9NQ84 441 aa17.86■□□□□ 0.45
COL4A1-204ENST00000543140 PLA2G4AP47712 749 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 VSNL1P62760 191 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 BRD3Q15059 726 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 LONRF2Q1L5Z9 754 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 PLA2G4FQ68DD2 849 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 NFRKBQ6P4R8 1299 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 DLK2Q6UY11 383 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 ZNF571Q7Z3V5 609 aaPredicted RBP17.85■□□□□ 0.45
COL4A1-204ENST00000543140 COG1Q8WTW3 980 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 PCIF1Q9H4Z3 704 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 LARSQ9P2J5 1176 aaKnown RBP17.85■□□□□ 0.45
COL4A1-204ENST00000543140 SNX12Q9UMY4 172 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 RLFQ13129 1914 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 KIAA1217Q5T5P2 1943 aa17.85■□□□□ 0.45
COL4A1-204ENST00000543140 TULP1O00294 542 aaPredicted RBP17.84■□□□□ 0.45
COL4A1-204ENST00000543140 BACH1O14867 736 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 EXOC3O60645 756 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 PPP1R37O75864 691 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 NPEPPSP55786 919 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 KIAA0753Q2KHM9 967 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 APOBEC3FQ8IUX4 373 aaKnown RBP17.84■□□□□ 0.45
COL4A1-204ENST00000543140 NOX5Q96PH1 765 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 DMAC2Q9NW81 257 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 DBR1Q9UK59 544 aaKnown RBP17.84■□□□□ 0.45
COL4A1-204ENST00000543140 UBE4BO95155 1302 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 POTEB2H3BUK9 544 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 SORBS3O60504 671 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 KLRC1P26715 233 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 TUBB4BP68371 445 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 STRA6Q9BX79 667 aa17.84■□□□□ 0.45
COL4A1-204ENST00000543140 RAB21Q9UL25 225 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms