RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 USP26Q9BXU7 913 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 FAM49AQ9H0Q0 323 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 EHMT1Q9H9B1 1298 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 AGO3Q9H9G7 860 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TBC1D17Q9HA65 648 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 KCNK12Q9HB15 430 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 PXMP2Q9NR77 195 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 PNMA2Q9UL42 364 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ZNF215Q9UL58 517 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 PADI3Q9ULW8 664 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 SIT1Q9Y3P8 196 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 NCOR2Q9Y618 2525 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 FNDC1Q4ZHG4 1894 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 EP300Q09472 2414 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 PLIN4Q96Q06 1357 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ZNF292O60281 2723 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 MAP1BP46821 2468 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 CCDC171Q6TFL3 1326 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 FANCMQ8IYD8 2048 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 M0QZ92 97 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 FSCN2O14926 492 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 LRRN2O75325 713 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 CXCL14O95715 111 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 TOP1P11387 765 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 UBA1P22314 1058 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 MARK3P27448 753 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 HOXA13P31271 388 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 GBP2P32456 591 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 MRPS6P82932 125 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 LMNB2Q03252 620 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 MGAT3Q09327 533 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 PAK2Q13177 524 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 CDC37Q16543 378 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 LPAL2Q16609 132 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 KCNV1Q6PIU1 500 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 AUTS2Q8WXX7 1259 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 APPBP2Q92624 585 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 NGRNQ9NPE2 291 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 SPATA6Q9NWH7 488 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 RTEL1Q9NZ71 1219 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 KIAA1468Q9P260 1216 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 SEPT9Q9UHD8 586 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 ANGPTL2Q9UKU9 493 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 DUSP12Q9UNI6 340 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 GINS2Q9Y248 185 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 MRPL11Q9Y3B7 192 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 TELO2Q9Y4R8 837 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 HCFC2Q9Y5Z7 792 aa5.54□□□□□ -1.52
LIMS1-214ENST00000542845 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.54□□□□□ -1.52
LIMS1-214ENST00000542845 TPRP12270 2363 aaKnown RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ABCB11O95342 1321 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 WDR19Q8NEZ3 1342 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 NRCAMQ92823 1304 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 CFAP47Q6ZTR5 3102 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 DENND3A2RUS2 1198 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 NT5C1B-RDH14C9J2C7 533 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 LAMTOR5O43504 91 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 SMARCA5O60264 1052 aaPredicted RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 CLASP2O75122 1294 aaKnown RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 MYBP10242 640 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PDHBP11177 359 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 FGFR1P11362 822 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 HOXD8P13378 290 aaPredicted RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 EPCAMP16422 314 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 CCND2P30279 289 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 HOXC8P31273 242 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ZNF543Q08ER8 600 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 SPEM2Q0P670 501 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PPFIA1Q13136 1202 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 SMC1AQ14683 1233 aaKnown RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PGM5Q15124 567 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 IER5Q5VY09 327 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 KIAA1841Q6NSI8 718 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 KCNT2Q6UVM3 1135 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 OTOP3Q7RTS5 596 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 CABP7Q86V35 215 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 FCHSD1Q86WN1 690 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ADGRF4Q8IZF3 695 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PNMA1Q8ND90 353 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 IL31RAQ8NI17 732 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 RASGRP4Q8TDF6 673 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 GPR152Q8TDT2 470 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 LRRN4Q8WUT4 740 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ADAM2Q99965 735 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PDCD2LQ9BRP1 358 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ZKSCAN3Q9BRR0 538 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 FTHL17Q9BXU8 183 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 FOXQ1Q9C009 403 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 CWH43Q9H720 699 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 WNT16Q9UBV4 365 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 TUBE1Q9UJT0 475 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 SMG5Q9UPR3 1016 aaKnown RBP5.53□□□□□ -1.52
LIMS1-214ENST00000542845 USTQ9Y2C2 406 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 PCDHA1Q9Y5I3 950 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 WDR87Q6ZQQ6 2873 aa5.53□□□□□ -1.52
LIMS1-214ENST00000542845 ACACBO00763 2458 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 C2orf71A6NGG8 1288 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 MGEA5O60502 916 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms