RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 FTOQ9C0B1 505 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS33A-207ENST00000542790 MTIF3Q9H2K0 278 aaKnown RBP13.89□□□□□ -0.19
VPS33A-207ENST00000542790 LRWD1Q9UFC0 647 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 PPME1Q9Y570 386 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 M0QZ92 97 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 LYPLA2O95372 231 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 CXCL10P02778 98 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 TMOD1P28289 359 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 YWHABP31946 246 aaKnown RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 ATP2C1P98194 919 aaPredicted RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 RESTQ13127 1097 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 TARBP2Q15633 366 aaKnown RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 C9orf50Q5SZB4 431 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 ARL6IP4Q66PJ3 421 aaKnown RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 EXOC8Q8IYI6 725 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 KIAA0319LQ8IZA0 1049 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 METTL13Q8N6R0 699 aa13.88□□□□□ -0.19
VPS33A-207ENST00000542790 RNPC3Q96LT9 517 aaKnown RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 POLR3CQ9BUI4 534 aaPredicted RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 WRAP73Q9P2S5 460 aaPredicted RBP13.88□□□□□ -0.19
VPS33A-207ENST00000542790 NBNO60934 754 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 CHRNA1P02708 482 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 XRCC6P12956 609 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS33A-207ENST00000542790 RPA1P27694 616 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 MRPS6P82932 125 aaKnown RBP13.87□□□□□ -0.19
VPS33A-207ENST00000542790 MBTPS1Q14703 1052 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 GPNMBQ14956 572 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 LRIT3Q3SXY7 679 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 MTERF2Q49AM1 385 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 HAUS3Q68CZ6 603 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 EFCAB12Q6NXP0 572 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 CATSPER3Q86XQ3 398 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 IGSF22Q8N9C0 903 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 HERVK_113Q902F9 699 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 VWCEQ96DN2 955 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 CEP170P1Q96L14 293 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 JPH2Q9BR39 696 aaPredicted RBP13.87□□□□□ -0.19
VPS33A-207ENST00000542790 KRTAP3-3Q9BYR6 98 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 KRTAP3-2Q9BYR7 98 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 SUGCTQ9HAC7 445 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 TUFT1Q9NNX1 390 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 CYP26B1Q9NR63 512 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 ANKEF1Q9NU02 776 aa13.87□□□□□ -0.19
VPS33A-207ENST00000542790 TMEM150BA6NC51 233 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 MAFO75444 373 aaPredicted RBP13.86□□□□□ -0.19
VPS33A-207ENST00000542790 SPATA31C1P0DKV0 1188 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 MUTP22033 750 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 DNM2P50570 870 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 SF3A1Q15459 793 aaKnown RBP13.86□□□□□ -0.19
VPS33A-207ENST00000542790 KRT79Q5XKE5 535 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 PLA2G4FQ68DD2 849 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 CNKSR3Q6P9H4 555 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 OTOP2Q7RTS6 562 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 USP38Q8NB14 1042 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 SLC7A3Q8WY07 619 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 CEP89Q96ST8 783 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 MAP7D2Q96T17 732 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 SH2D3AQ9BRG2 576 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 CELF4Q9BZC1 486 aaKnown RBP13.86□□□□□ -0.19
VPS33A-207ENST00000542790 LHX6Q9UPM6 363 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 TRPV2Q9Y5S1 764 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 CDY2AQ9Y6F7 541 aa13.86□□□□□ -0.19
VPS33A-207ENST00000542790 IGKV6-21A0A0C4DH24 114 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 MED24O75448 989 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 BAIAP3O94812 1187 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 ZSCAN22P10073 491 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-207ENST00000542790 CCT6AP40227 531 aaKnown RBP13.85□□□□□ -0.19
VPS33A-207ENST00000542790 RFC5P40937 340 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 CLCN3P51790 818 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 NPEPPSP55786 919 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 CDC42EP1Q00587 391 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 MGAT3Q09327 533 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 TMEM62Q0P6H9 643 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 IL17AQ16552 155 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 XKR9Q5GH70 373 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 RASIP1Q5U651 963 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 LINC01465Q8N7H1 131 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 SEPT8Q92599 483 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 CCDC43Q96MW1 224 aaKnown RBP13.85□□□□□ -0.19
VPS33A-207ENST00000542790 NACC1Q96RE7 527 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 AKT3Q9Y243 479 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 SQORQ9Y6N5 450 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 KDM3AQ9Y4C1 1321 aa13.85□□□□□ -0.19
VPS33A-207ENST00000542790 DOCK5Q9H7D0 1870 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 ABHD14A-ACY1A0A1B0GW23 586 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 VWA3AA6NCI4 1184 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 ZBBXA8MT70 800 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 ZBTB39O15060 712 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 EFCAB14O75071 495 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 POLGP54098 1239 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-207ENST00000542790 IKBKEQ14164 716 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 PLEKHG4Q58EX7 1191 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 FBXO47Q5MNV8 452 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 FAM173BQ6P4H8 233 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 FAM43BQ6ZT52 329 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-207ENST00000542790 LRRC71Q8N4P6 559 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 DBF4BQ8NFT6 615 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 SNX29Q8TEQ0 813 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 APBB2Q92870 758 aa13.84□□□□□ -0.19
VPS33A-207ENST00000542790 AK8Q96MA6 479 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms