RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TRIM33Q9UPN9 1127 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 DUOX1Q9NRD9 1551 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 SNX3O60493 162 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 SEPT2Q15019 361 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 KIAA1755Q5JYT7 1200 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 INTS8Q75QN2 995 aaKnown RBP13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 TRIM59Q8IWR1 403 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 LRRC57Q8N9N7 239 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 PGM2Q96G03 612 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 TSC22D3Q99576 134 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 ETNK1Q9HBU6 452 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 KLHL14Q9P2G3 628 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 M0R2N6 131 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 RARAP10276 462 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 XRCC5P13010 732 aaKnown RBP13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 CROCCP2Q86T23 111 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 VSIG1Q86XK7 387 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 JAMLQ86YT9 394 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 OSGEPQ9NPF4 335 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 EMILIN3Q9NT22 766 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 PNMA3Q9UL41 463 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 PTPN22Q9Y2R2 807 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 SMNDC1O75940 238 aaKnown RBP eCLIP13.9□□□□□ -0.181e-14■■■■□ 22.7
SFSWAP-209ENST00000540469 USP17L2Q6R6M4 530 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 GJA10Q969M2 543 aa13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 RNF25Q96BH1 459 aaPredicted RBP13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 G3BP2Q9UN86 482 aaKnown RBP13.9□□□□□ -0.18
SFSWAP-209ENST00000540469 MYH1P12882 1939 aa13.9□□□□□ -0.19
SFSWAP-209ENST00000540469 MYH4Q9Y623 1939 aa13.9□□□□□ -0.19
SFSWAP-209ENST00000540469 STRCQ7RTU9 1775 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 LRRD1A4D1F6 860 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 NT5DC3Q86UY8 548 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 GPBP1Q86WP2 473 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC44A5Q8NCS7 719 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 ZCWPW1Q9H0M4 648 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 TMOD4Q9NZQ9 345 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SH3BP1Q9Y3L3 701 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 NPHP3-ACAD11A0A0J9YXS1 232 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 AFPP02771 609 aaKnown RBP13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 STX2P32856 288 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 CTCFP49711 727 aaPredicted RBP13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 GALCP54803 685 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SPATA21Q7Z572 469 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 CCDC105Q8IYK2 499 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 ACSBG1Q96GR2 724 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 PIGSQ96S52 555 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 GANQ9H2C0 597 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 TFCP2L1Q9NZI6 479 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 ZFATQ9P243 1243 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 CORO1CQ9ULV4 474 aaPredicted RBP13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 NIP7Q9Y221 180 aaKnown RBP eCLIP13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 KCPQ6ZWJ8 1503 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC37A4O43826 429 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 ACSL3O95573 720 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 FGRP09769 529 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 PRDX5P30044 214 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 PPP2R5EQ16537 467 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC30A9Q6PML9 568 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 BARGINQ6ZT62 677 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC17A8Q8NDX2 589 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 NAF1Q96HR8 494 aaKnown RBP13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 TMEM47Q9BQJ4 181 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 FGFBP2Q9BYJ0 223 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 IL17RBQ9NRM6 502 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC5A4Q9NY91 659 aa13.89□□□□□ -0.19
SFSWAP-209ENST00000540469 H0Y3Z8 333 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 LGR5O75473 907 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 SNUPNO95149 360 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 PLCG2P16885 1265 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 LONRF1Q17RB8 773 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 IRF2BP2Q7Z5L9 587 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 ARHGEF2Q92974 986 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 RAB3IPQ96QF0 476 aaPredicted RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 SAP30BPQ9UHR5 308 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 KIAA1024Q9UPX6 916 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 ARL2BPQ9Y2Y0 163 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 E9PMD0 336 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 NUDT17P0C025 328 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 STAT1P42224 750 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 RWDD2BP57060 319 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 PTENP60484 403 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 ICA1Q05084 483 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 CALCOCO2Q13137 446 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 LLGL1Q15334 1064 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 GJB7Q6PEY0 223 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 COL23A1Q86Y22 540 aaPredicted RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 GLYCTKQ8IVS8 523 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 KSR1Q8IVT5 923 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 NSUN4Q96CB9 384 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 BTG4Q9NY30 223 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 GCNT4Q9P109 453 aa13.88□□□□□ -0.19
SFSWAP-209ENST00000540469 TMEM120BA0PK00 339 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 RAD23BP54727 409 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 MKRN4PQ13434 485 aaPredicted RBP13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 CNGA2Q16280 664 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC35G2Q8TBE7 412 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 ATP8B4Q8TF62 1192 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 C18orf8Q96DM3 657 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 CASZ1Q86V15 1759 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms