RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SLITRK6Q9H5Y7 841 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 H7C0C1 242 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 LPXNO60711 386 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 TOM1O60784 492 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 ATP5OP48047 213 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MRPL12P52815 198 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 RESTQ13127 1097 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 EFTUD2Q15029 972 aaKnown RBP eCLIP9.34□□□□□ -0.917e-14■■■□□ 17.9
YBX3-208ENST00000540447 CCDC153Q494R4 210 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 TBC1D10BQ4KMP7 808 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 RAB44Q7Z6P3 723 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 GRAMD1CQ8IYS0 662 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 SKA1Q96BD8 255 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MRPL1Q9BYD6 325 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 CYLDQ9NQC7 956 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 HERC5Q9UII4 1024 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 WDR37Q9Y2I8 494 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 C1orf232A0A0U1RR37 186 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 ZNF185O15231 689 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 GUCY1B2O75343 617 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 ANXA1P04083 346 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MMP14P50281 582 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 DDR1Q08345 913 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 PDAP1Q13442 181 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 KIF19Q2TAC6 998 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 P2RX5Q93086 422 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 ZFRQ96KR1 1074 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 LSG1Q9H089 658 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 FAM187AA6NFU0 413 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 LIN7AO14910 233 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 PSMC3P17980 439 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 CCT3P49368 545 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 AARSP49588 968 aaKnown RBP eCLIP9.34□□□□□ -0.91
YBX3-208ENST00000540447 RPS6P62753 249 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 ZNF555Q8NEP9 628 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 PPP2R3CQ969Q6 453 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 CHPF2Q9P2E5 772 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 AURKCQ9UQB9 309 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 NOC2LQ9Y3T9 749 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 BLMP54132 1417 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 OTUD4Q01804 1114 aaKnown RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 TMTC4Q5T4D3 741 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MAEAQ7L5Y9 396 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 ZNF786Q8N393 782 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 DEPDC1BQ8WUY9 529 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 BHMT2Q9H2M3 363 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 IVNS1ABPQ9Y6Y0 642 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 INSRP06213 1382 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 EHBP1L1Q8N3D4 1523 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 PJA2O43164 708 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 KRT16P08779 473 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 PPM1FP49593 454 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 ELF3P78545 371 aaPredicted RBP9.34□□□□□ -0.91
YBX3-208ENST00000540447 RASGRF1Q13972 1273 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MTF1Q14872 753 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 SPOPLQ6IQ16 392 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 IYDQ6PHW0 289 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 KLHL4Q9C0H6 718 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 VPS54Q9P1Q0 977 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 HAO1Q9UJM8 370 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 DAPK1P53355 1430 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
YBX3-208ENST00000540447 MAPK4P31152 587 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 RUNX1T1Q06455 604 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 USP4Q13107 963 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ADAM9Q13443 819 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ANKLE2Q86XL3 938 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 MYCT1Q8N699 235 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 NOA1Q8NC60 698 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 SUPT20HQ8NEM7 779 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 BBS2Q9BXC9 721 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 METTL14Q9HCE5 456 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 MBD2Q9UBB5 411 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SNX12Q9UMY4 172 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 AKAP10O43572 662 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 PRLP01236 227 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ATP2B4P23634 1241 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 KLHL38Q2WGJ6 581 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 TUBA3EQ6PEY2 450 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 MICU2Q8IYU8 434 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SLC17A8Q8NDX2 589 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 TSPAN18Q96SJ8 248 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SLC38A10Q9HBR0 1119 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 HACD3Q9P035 362 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ATP6V1HQ9UI12 483 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 RABL2BQ9UNT1 228 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 STAM2O75886 525 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SLC12A1Q13621 1099 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 INPP5AQ14642 412 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 PPP2R5BQ15173 497 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 KRT73Q86Y46 540 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SLF2Q8IX21 1173 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 PDIK1LQ8N165 341 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 CCDC28BQ9BUN5 200 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 DCDC2Q9UHG0 476 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 DDX20Q9UHI6 824 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 SYNGAP1Q96PV0 1343 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 MAGEB6P1A0A0J9YX57 407 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 CALCRLQ16602 461 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 WASHC2DQ5SRD0 308 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms