RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 KDM3AQ9Y4C1 1321 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 BTNL10A8MVZ5 291 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 F8VZ95 297 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 BUB1BO60566 1050 aaPredicted RBP22.08■■□□□ 1.12
TMEM260-203ENST00000539559 CAND2O75155 1236 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 POLD1P28340 1107 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 NT5C2P49902 561 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 EPHA7Q15375 998 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 SHROOM1Q2M3G4 852 aaPredicted RBP22.08■■□□□ 1.12
TMEM260-203ENST00000539559 GLYCTKQ8IVS8 523 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 ERVK-5Q9HDB9 667 aa22.08■■□□□ 1.12
TMEM260-203ENST00000539559 NPR1P16066 1061 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 MRPL12P52815 198 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 KNOP1Q1ED39 458 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 ANKRD20A8PQ5CZ79 823 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 HYIQ5T013 277 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 DCAF12L1Q5VU92 463 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 CPLX4Q7Z7G2 160 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 CEP57Q86XR8 500 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 LNX1Q8TBB1 728 aaPredicted RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 BCS1LQ9Y276 419 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 TLDC2A0PJX2 215 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 hCG_1984214I3L0E3 225 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 CES2O00748 559 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 CLSTN1O94985 981 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 MMP10P09238 476 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 BIRC3Q13489 604 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 EDRF1Q3B7T1 1238 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 KSR1Q8IVT5 923 aa22.07■■□□□ 1.12
TMEM260-203ENST00000539559 DHX37Q8IY37 1157 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 ZNF713Q8N859 430 aaPredicted RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 CALR3Q96L12 384 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 P2RX7Q99572 595 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 DDX4Q9NQI0 724 aaKnown RBP22.07■■□□□ 1.12
TMEM260-203ENST00000539559 BHMG1C9JSJ3 638 aaPredicted RBP22.06■■□□□ 1.12
TMEM260-203ENST00000539559 PDE6BP35913 854 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 NOVP48745 357 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 IFI16Q16666 785 aaKnown RBP22.06■■□□□ 1.12
TMEM260-203ENST00000539559 PRR16Q569H4 304 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 ZC3H3Q8IXZ2 948 aaKnown RBP22.06■■□□□ 1.12
TMEM260-203ENST00000539559 SCLT1Q96NL6 688 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 SNHG28P0DPA3 235 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 FAM228AQ86W67 206 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 CACNA2D3Q8IZS8 1091 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 ATP8B4Q8TF62 1192 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 TBC1D22AQ8WUA7 517 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 UTP11Q9Y3A2 253 aaKnown RBP22.06■■□□□ 1.12
TMEM260-203ENST00000539559 ARFGEF1Q9Y6D6 1849 aa22.06■■□□□ 1.12
TMEM260-203ENST00000539559 ALDH1B1P30837 517 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 C10orf76Q5T2E6 689 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 NR3C1P04150 777 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 CDR1P51861 262 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 CYB5D1Q6P9G0 228 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 FRMD5Q7Z6J6 570 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 SLFN11Q7Z7L1 901 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 FUKQ8N0W3 1084 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 CCDC26Q8TAB7 109 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 SLC35G2Q8TBE7 412 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 SLC35C1Q96A29 364 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 PSMD1Q99460 953 aa22.05■■□□□ 1.12
TMEM260-203ENST00000539559 SEPT11Q9NVA2 429 aaKnown RBP22.05■■□□□ 1.12
TMEM260-203ENST00000539559 SPDYE3A6NKU9 549 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 CCDC188H7C350 402 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 ZBTB5O15062 677 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 CHUKO15111 745 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 EVI5O60447 810 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 GCNT3O95395 438 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 RDXP35241 583 aaKnown RBP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 SCTRP47872 440 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 E2F5Q15329 346 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 RASGEF1CQ8N431 466 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 TATDN2Q93075 761 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 FMO2Q99518 471 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 SELENOSQ9BQE4 189 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 TAS2R14Q9NYV8 317 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 TMOD4Q9NZQ9 345 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 SUCLA2Q9P2R7 463 aaPredicted RBP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 FRMD3A2A2Y4 597 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 TTLL1O95922 423 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 AGBL2Q5U5Z8 902 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 PALB2Q86YC2 1186 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 ARHGEF26Q96DR7 871 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 HES6Q96HZ4 224 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 ANO3Q9BYT9 981 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 CHORDC1Q9UHD1 332 aaPredicted RBP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 AMFRQ9UKV5 643 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 ATF5Q9Y2D1 282 aaPredicted RBP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 DAGLAQ9Y4D2 1042 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 BZW2Q9Y6E2 419 aaKnown RBP22.04■■□□□ 1.12
TMEM260-203ENST00000539559 ASTN1O14525 1302 aa22.04■■□□□ 1.12
TMEM260-203ENST00000539559 FAM196BA6NMK8 535 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 CTNND1O60716 968 aaKnown RBP22.03■■□□□ 1.12
TMEM260-203ENST00000539559 DRD4P21917 467 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 JAM2P57087 298 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 MTMR3Q13615 1198 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 MTFR1LQ9H019 292 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 KCNMB3Q9NPA1 279 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 NENFQ9UMX5 172 aa22.03■■□□□ 1.12
TMEM260-203ENST00000539559 TRAF3IP3Q9Y228 551 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms